View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8168_high_2 (Length: 455)
Name: NF8168_high_2
Description: NF8168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8168_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 52167477 - 52167040
Alignment:
| Q |
1 |
atcttctaaaatactcttccatcattattttagaatttcgcataaatccataaataggagcaaaatagtgttttttagtagtagtaactaatttttatga |
100 |
Q |
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| T |
52167477 |
atcttctaaaatactcttccatcattattttagaatttcgcataaatccataaataggagcaaaatagtgttttttagtagta---actaatttttatga |
52167381 |
T |
|
| Q |
101 |
agatgnnnnnnn-atgaattaaaaggtaatgttcgttccatgggtattacatatattttccttaagttaagacaaacatgtttactattttctcatattt |
199 |
Q |
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| T |
52167380 |
agacgtttttttgatgaattaaaaggtagt----gttccatggatattacatatattttccttaagttaagacatacatgtttactattttctcatattt |
52167285 |
T |
|
| Q |
200 |
cttataagacgcaacacaattatgactgttaaaacaacacaacaataaagactggttttttattggattctgaataataagaggttaatgtgaacgattc |
299 |
Q |
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| T |
52167284 |
cttataagacgcaacacaattgtgactgttaaaacaacacaacaataaatactggttttttattgcattcagaataataagaggttaatgtgaacgattt |
52167185 |
T |
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| Q |
300 |
gttattgaaagtaggaaatnnnnnnnnnnncttaatagcaggagagtgcaaaagtagacagcaaatcaattcccaaacatcagaccaagaaacaaaaaga |
399 |
Q |
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| T |
52167184 |
gttattgaaagtaggaaa-aaaaaaaaaaaattaatagcaagagagtgcaaaagtagacatcaaatcaattcccaaacatcagaccaagaaacaaaaaga |
52167086 |
T |
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| Q |
400 |
catctgaaatcattttcctttgccgcaaatgattacttgtcctttg |
445 |
Q |
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| T |
52167085 |
catctgaaatcattttcctttgccgcaaatgattacttgtcctttg |
52167040 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 43813989 - 43814033
Alignment:
| Q |
142 |
ggtattacatatattttccttaagtt-aagacaaacatgtttact |
185 |
Q |
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| T |
43813989 |
ggtattacatacattttccttaagttaaagacaaacatgtttact |
43814033 |
T |
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