View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8168_low_1 (Length: 579)
Name: NF8168_low_1
Description: NF8168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8168_low_1 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 194 - 579
Target Start/End: Original strand, 38183506 - 38183891
Alignment:
| Q |
194 |
cattctttgcgtacatataaaccaatggcgtcgcaagaaccacacccacttcaacctctttcactcataaactcatgaaccatttccccaagctcaagac |
293 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38183506 |
cattctttgcgtacatataaaccaatggcgtcacaagaaccacacccacttcaacctctttcactcataaactcatgaaccatttccccaagctcaagac |
38183605 |
T |
|
| Q |
294 |
aacccggccggacacaagccgacaacaccgaaaccaaggtagcaccagtaggcttaaaccctacaacaaccatatccccttaaaaagttctgagcatata |
393 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38183606 |
aacccgaccgggcacaagccgacaacaccgaaaccaaggtagcaccagtaggcttaaaccctacaacaaccatatccccttaaaaagttatgagcatata |
38183705 |
T |
|
| Q |
394 |
cctacaaatcttgtagttcaaagactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccacatcaccagaaatagaatagccacatg |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38183706 |
cctacaaatcttgtagttcaaagactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccaaatcaccagaaatagaatagccacatg |
38183805 |
T |
|
| Q |
494 |
acaatctaagtccagcctgaatttaagcacgtgtgtttggacctgtttagaaggtaccaatataaatacaataaaggatattttaa |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38183806 |
acaatctaagtccagcctgaatttaagcacgtgtgtttggacctgtttagaaggtaccaatatcaatacaataaaggatattttaa |
38183891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38183256 - 38183456
Alignment:
| Q |
1 |
tcgataccatacacaaccttcatcgaacaaaaaacctcgcgaccgacatcaatcaaatctgcatgacaactagcagatagaatcccaacgaatgtgacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38183256 |
tcgataccatacacaaccttcatcgaacaaaaaacctcgcgaccgacatcaatcaaatctgcatgacaactagcagatagaatcccaacgaatgtgacac |
38183355 |
T |
|
| Q |
101 |
cattaggaacaacaatcccctccttcttcatactgtcaaataaattaagagcatcttcaacatgtcc---atgagaagccaaaccaaatatcatagcatt |
197 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38183356 |
cattaggaacaacaatcccctccttcttcatactctcaaataaattaagagcatcttcaacatgtccatgatgagaagccaaaccaaatatcatagcatt |
38183455 |
T |
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| Q |
198 |
c |
198 |
Q |
| |
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| |
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|
| T |
38183456 |
c |
38183456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 12011231 - 12011422
Alignment:
| Q |
7 |
ccatacacaaccttcatcgaacaaaaaacctcgcgaccgacatcaatcaaatctgcatgacaactagcagatagaatcccaacgaatgtgacaccattag |
106 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| || |||||| ||||||||| |||||| |
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| T |
12011231 |
ccatgcacaaccttcatcgaacaaaaaacctcgcggccgacatcaatcaaacctgcatgacaacaagcagataaaaccccaacaaatgtgacagcattag |
12011330 |
T |
|
| Q |
107 |
gaacaacaatcccctccttcttcatactgtcaaataaattaagagcatcttcaacatgtccatgagaagccaaaccaaatatcatagcattc |
198 |
Q |
| |
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||||||||||| |||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
12011331 |
gaacaacaatctcctcctccttcatacactcaaacaaaccaagagcatcttcaacatgtccatgagaagccaaaccacaaatcatagcattc |
12011422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 194 - 366
Target Start/End: Original strand, 12011484 - 12011658
Alignment:
| Q |
194 |
cattctttgcgtacatataaaccaatggcgtcgcaagaaccacacccacttcaacctctttcactc--ataaactcatgaaccatttccccaagctcaag |
291 |
Q |
| |
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||||||| || |||||||||||||| | ||| |||||| || |||||||||||| ||||||||| ||||||||||||| | |||||||||||||||| |
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| T |
12011484 |
cattcttcgcatacatataaaccaacgcggtcccaagaataactcccacttcaacccctttcactctcataaactcatgaatcctttccccaagctcaag |
12011583 |
T |
|
| Q |
292 |
acaacccggccggacacaagccgacaacaccgaaaccaaggtagcaccagtaggcttaaaccctacaacaaccat |
366 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||| |||| ||||||||| |||||| |||||| ||||||||||| |
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| T |
12011584 |
acaacccgaccgagcacaaaccgacaacaccgaagccaaagtagcaccattaggctcaaacccaacaacaaccat |
12011658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 38189488 - 38189644
Alignment:
| Q |
194 |
cattctttgcgtacatataaaccaatggcgtcgcaagaaccacacccacttcaacctctttcactc--ataaactcatgaaccatttccccaagctcaag |
291 |
Q |
| |
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||||||| ||||||||||| |||||| |||||||||| ||| |||||||||||| ||||| ||| ||||||||||||| |||||||||||||| || |
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| T |
38189488 |
cattcttcacgtacatataagccaatgccgtcgcaagactcactcccacttcaacccctttcgctcttataaactcatgaatcatttccccaagcttcag |
38189587 |
T |
|
| Q |
292 |
acaacccggccggacacaagccgacaacaccgaaaccaaggtagcaccagtaggctt |
348 |
Q |
| |
|
|||| | | | || |||||||| |||||||| |||||||| ||||||| ||||||| |
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| T |
38189588 |
acaatctgactgggcacaagccaacaacaccaaaaccaagatagcacccttaggctt |
38189644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 21009563 - 21009757
Alignment:
| Q |
4 |
ataccatacacaaccttcatcgaacaaaaaacctcgcgaccgacatcaatcaaatctgcatgacaactagcagatagaatcccaacgaatgtgacaccat |
103 |
Q |
| |
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||||||||||| |||||||||||| |||||||||| ||| | |||||||||||| | |||| ||||| | |||| | || ||| | ||||||||| || |
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| T |
21009563 |
ataccatacacgaccttcatcgaataaaaaacctcacgagcaacatcaatcaaaccagcataacaacaaacagaaacaacacca-caaatgtgacattat |
21009661 |
T |
|
| Q |
104 |
ta-ggaacaacaatcccctccttcttcatactgtcaaataaattaagagcatcttcaacatgtccatgagaagccaaaccaaatatcatagcattc |
198 |
Q |
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|| ||||| | ||||||||||| || |||| ||| | | ||||||||||||||||||| |||||||||||||| || |||||||||||||| |
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| T |
21009662 |
taaggaacgatgatcccctccttatttgtactcagaaacagactaagagcatcttcaacatgcacatgagaagccaaagcacatatcatagcattc |
21009757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 490
Target Start/End: Original strand, 12011726 - 12011804
Alignment:
| Q |
412 |
caaagactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccacatcaccagaaatagaatagccac |
490 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||||| |||||| |||||||||| ||||||||||| |||||| |||| |
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|
| T |
12011726 |
caaagactcaaatttttcatcggaatttcatcaaacacgtaacgtgcatcaaccaaatcaccagaaacagaatacccac |
12011804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 20952760 - 20952954
Alignment:
| Q |
7 |
ccatacacaa-ccttcatcgaacaaaaaacctcgcgaccgacatcaatcaaatctgc--atgacaactagcagatagaatcccaacgaatgtgacaccat |
103 |
Q |
| |
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|||||||||| ||||||||||| ||||| |||||||| | |||||||||||| |||| || ||||| | || ||| || || ||||||||||||| | |
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| T |
20952760 |
ccatacacaaaccttcatcgaataaaaatcctcgcgagcaacatcaatcaaacctgcatataacaacaaacaaataaaacaccgacgaatgtgacactgt |
20952859 |
T |
|
| Q |
104 |
taggaacaacaatcccctccttcttcatactgtcaaataaattaagagcatcttcaacatgtccatgagaagccaaaccaaatatcatagcattc |
198 |
Q |
| |
|
||||||||| ||||||||||| || |||| ||| | | | |||||||||||||||| | ||||||| ||| ||||| ||||||| |||||| |
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|
| T |
20952860 |
taggaacaatgatcccctccttattggtactcagaaacagactgagagcatcttcaacatttgcatgagacgccgaaccacatatcatggcattc |
20952954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 451
Target Start/End: Original strand, 38190069 - 38190146
Alignment:
| Q |
375 |
aaaaagttctgagcatatacctacaaatc-ttgtagttcaaagactcaaacttttcagcagaatttcatcaaacatgt |
451 |
Q |
| |
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||||||| |||||||| ||| ||||||| ||||||| | |||||||||||||||||||| ||||||||||||||||| |
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| T |
38190069 |
aaaaagtcatgagcatacacccacaaatcattgtagtccgaagactcaaacttttcagcaaaatttcatcaaacatgt |
38190146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 474
Target Start/End: Complemental strand, 7857044 - 7856986
Alignment:
| Q |
416 |
gactcaaacttttcagcagaatttcatcaaacatgtaacgggcatcaaccacatcacca |
474 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||| | ||||||| |
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|
| T |
7857044 |
gactcaaacttttctcgggaattttatcaaacatgtaacgggcatcaacaaaatcacca |
7856986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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