View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8168_low_5 (Length: 248)
Name: NF8168_low_5
Description: NF8168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8168_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 42799395 - 42799148
Alignment:
| Q |
1 |
ttcgaaagttggggaaccaaggaactatctgatgttggtcttccccttgtgacaccaaaacagatcatcaaggtgtgtactatatcatataagctctcat |
100 |
Q |
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| T |
42799395 |
ttcgaaagttggggaaccaaggaactatctgatgttggtcttccccttgtgacaccaaaacagatcatcaaggtgtgtactatatcatataagctctcat |
42799296 |
T |
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| Q |
101 |
tgcattgaaccttgtcaagtatgaattctgcataactctagtgcatacagagtaaaatgctatcttgcatttcttaaatgtgtgtgcatatatggaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799295 |
tgcattgaaccttgtcaagtatgaattctgcataactctagtgcatacagagtaaaatgctatcttgcatttcttaaatgtgtgtgcatatatggaaaat |
42799196 |
T |
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| Q |
201 |
gcttcaaaatagttatttcatttcccctttcaagtaaagcaagcttgt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
42799195 |
gcttcaaaatagttatttcatttcccctttcaagtaaagtaaacttgt |
42799148 |
T |
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