View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_high_13 (Length: 297)
Name: NF8169_high_13
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 41127665 - 41127791
Alignment:
| Q |
158 |
gcctttgtatatgttaattaataatgctggctgtttatgtatgat-attaatatagaacttgttccacaattaataacagatatggattatatgactagt |
256 |
Q |
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| T |
41127665 |
gcctttgtatatgttaattaataatgctggttgtttatgtatgattattaatatagaacttgttccacaattaattacagatatggattatatgactagt |
41127764 |
T |
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| Q |
257 |
gcaatgctctttttggtgacatgcatt |
283 |
Q |
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| T |
41127765 |
gcaatgctctttttggtgacatgcatt |
41127791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41127495 - 41127600
Alignment:
| Q |
1 |
tcatcctcctataaaatggggtgaccaagaaagtaagtggcaagaa-------------taagaagtcttgatatctttggttcacttttagtacttaag |
87 |
Q |
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| T |
41127495 |
tcatcctcctataaaatggggtgaccaagaaagtaagtggcaagaacaagaagtctttcaaagaagtcttgatatctttggttcacttttagtacttaag |
41127594 |
T |
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| Q |
88 |
taagtc |
93 |
Q |
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|||||| |
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| T |
41127595 |
taagtc |
41127600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 41033297 - 41033337
Alignment:
| Q |
4 |
tcctcctataaaatggggtgaccaagaaagtaagtggcaag |
44 |
Q |
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| T |
41033297 |
tcctcctataaattggggtgagcaagaaagtaagtggcaag |
41033337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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