View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8169_high_4 (Length: 476)
Name: NF8169_high_4
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Original strand, 2124157 - 2124608
Alignment:
| Q |
7 |
tttggtgttggttaggcaatggatatatgttttcattcaatgaaacctttacatttgaccaataatattttcccacattactagtctaagaggcttctcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2124157 |
tttggtgttggttaggcaatggatatatgttttcattcaatgaaacctttgcatttgactaataatattttcccacattactagtctaagaggcttctcc |
2124256 |
T |
|
| Q |
107 |
aataaaaaccgtccttattaaaattgatttgatcatcttttcacccttagtggcttaatcattttataagtttggatactgtttctttagtggcttaatc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2124257 |
aataaaaaccgtccttattaaaattgatttgatcatcttttcatccttagtggcttaatcattttataagtttggatactgtttctttagtggcttaatc |
2124356 |
T |
|
| Q |
207 |
attttatatatttggataccgtttcttagttgtaacattcatgttgtatttggacttgttaaagaaaactttcttatatgaaaaaggtatagaagtacat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2124357 |
attttatatatttggataccgtttcttagttgtaacattcatgttgtatttggacttgttaaagaaaactttcttatatgaaaaaggtatagaagtacat |
2124456 |
T |
|
| Q |
307 |
cgtactattaaaatctgtagcgtactaatatttataccaatctatataaacacacccttgttttgttttatctcaatctaattttatctacccctaagta |
406 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2124457 |
cgtactatt--gatctgtagcgtactaatatttataccaatctatataaacacacccttgttttgttttatctcaatctaattttatctacccctaagta |
2124554 |
T |
|
| Q |
407 |
cgtatatatacgaacaatggtacgtacgtgtcttaatgaagacgaagcaaatgc |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2124555 |
cgtatatatacgaacaatggtacgtacgtgtcttaatgaagacgaagcagatgc |
2124608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University