View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_high_6 (Length: 403)
Name: NF8169_high_6
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 19992632 - 19992435
Alignment:
| Q |
19 |
tcaacagcgccgaagaagaactcgaagctaaattagggtttgatctcttctctgaaggtgaaaaacgactcggatggttactcactttttcatccgtaag |
118 |
Q |
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| T |
19992632 |
tcaacagcgccgaagaagaactcgaagctaaattagggtttgatctcttctctgaaggtgaaaaacgactcggatggttactcactttttcatccgtaag |
19992533 |
T |
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| Q |
119 |
ttcatttcacttttcagtttctcgatcttgaattcagtgttttcacttgttctagtactgaattgatgaatgaagttgcttattgcaataatcgatta |
216 |
Q |
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| T |
19992532 |
ttcatttcacttttcagtttctcgatcttgaattcagtgttttcacttgttctagtactgaattgatgaatgtagttgcttattgaaagaatcgatta |
19992435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 284 - 390
Target Start/End: Complemental strand, 19992362 - 19992257
Alignment:
| Q |
284 |
aagttgcttgttgcaagaatttgactaaatttgaattaaattgacgaacttagttgcttgttgcaagaattgattaactatgaatcaaattgtttcttac |
383 |
Q |
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| T |
19992362 |
aagttgcttgttgcaagaatt-gactaaatttgaattaaattgactaacgtagttgcttattgcaagaattgattaagtatggataaaattgtttcttac |
19992264 |
T |
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| Q |
384 |
acaggtt |
390 |
Q |
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| T |
19992263 |
ataggtt |
19992257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 28119697 - 28119779
Alignment:
| Q |
285 |
agttgcttgttgcaagaatttgactaaatttgaattaaattgacgaacttagttgcttgttgcaagaattgattaactatgaat |
368 |
Q |
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| T |
28119697 |
agttgcttgttgcaagactc-gattaagtatgaattaaattgacgaatgcagttgcttattgcaagaattgattaagtatgaat |
28119779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 19992411 - 19992321
Alignment:
| Q |
284 |
aagttgcttgttgcaagaatttgactaaatttgaattaaattgacgaacttagttgcttgttgcaagaattgattaactatgaatcaaattg |
375 |
Q |
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| T |
19992411 |
aagttgcttattgcaagaattggt-taagtgtgaataaaattgatgaaataagttgcttgttgcaagaattgactaaatttgaattaaattg |
19992321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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