View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_high_8 (Length: 348)
Name: NF8169_high_8
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 37792571 - 37792903
Alignment:
| Q |
1 |
taatgagataaagaatcactggcacactaccttgaagaagcgttttgtaaagaatatcaagtctaaacgtggaacgagaatagcaaaagattcaaattca |
100 |
Q |
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| T |
37792571 |
taatgagataaagaatcactggcacactaccttgaagaagcgttttgtaaagaatatcaagtcgaaacgtggaacgagaatagcaaaagattcaaattca |
37792670 |
T |
|
| Q |
101 |
aataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgcaaatcaaatatctccacaaccatctt |
200 |
Q |
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| T |
37792671 |
aataatcaccctacattggaagaacctaagaaatttgaagtagttttagagagcaacaatgatcctaatattgcaaatcaaatatctccgcaaccatctt |
37792770 |
T |
|
| Q |
201 |
caagcgaattgtcttgcataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttctg |
300 |
Q |
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| T |
37792771 |
caagcgaattgtcttgcataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatggagaattttagtgagaatttctg |
37792870 |
T |
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| Q |
301 |
gacagagccatatatgatagacaattcatatgt |
333 |
Q |
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| T |
37792871 |
gacagagccatatatgatagacaattcatatgt |
37792903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 37793173 - 37793246
Alignment:
| Q |
102 |
ataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgca |
175 |
Q |
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| T |
37793173 |
ataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataatcctaatactgca |
37793246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 37792909 - 37793031
Alignment:
| Q |
102 |
ataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgcaaatcaaatatctccacaaccatcttc |
201 |
Q |
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|||||||||||||| |||||||| | |||||| ||||||||||||| |||||||| | ||||| |||||| | | || | ||||| ||||||||| ||| |
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| T |
37792909 |
ataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttc |
37793008 |
T |
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| Q |
202 |
aagcgaattgtcttgcataacaa |
224 |
Q |
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||| | ||| ||||||||||||| |
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| T |
37793009 |
aagtggattctcttgcataacaa |
37793031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 328
Target Start/End: Original strand, 37793272 - 37793366
Alignment:
| Q |
234 |
caattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttctggacagagccatatatgatagacaattca |
328 |
Q |
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| T |
37793272 |
caattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatgattgacagttca |
37793366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 37809233 - 37809331
Alignment:
| Q |
65 |
aaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgat |
163 |
Q |
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||||||||||||| || ||| ||||| ||||||||||| |||||||||||| ||||| |||| |||||| ||| || | | ||||||||||||| |||| |
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| T |
37809233 |
aaacgtggaacgaaaaaagccaaagactcaaattcaaaaaatcaccctacaatggaaaaacccaagaaacttggagaaatgttagagaacaacagtgat |
37809331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 37793378 - 37793508
Alignment:
| Q |
103 |
taatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgcaaatcaaatatctccacaaccatcttca |
202 |
Q |
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|||||||| |||| |||||||| | |||||| ||||||||||||| ||| |||||| |||||| |||| || | || | ||||| |||||||||| ||| |
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| T |
37793378 |
taatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatca |
37793477 |
T |
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| Q |
203 |
agcgaattgtcttgcataacaatggacaatg |
233 |
Q |
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| | ||| |||| ||||||||||| |||| |
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| T |
37793478 |
aatggattctcttcaataacaatggaaaatg |
37793508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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