View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_high_9 (Length: 343)
Name: NF8169_high_9
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 34623922 - 34623622
Alignment:
| Q |
1 |
ggtgagccagaaatattacttgaattaaaggagacttagatgttgagtgacttaagggttcaaaggagactaatggattatgtagttcatagcattgttt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
34623922 |
ggtgagccagaaatattacttgaattaaagaagactcagatgttgagtgacttaagggttcaaaggagactaatagattatgtagttcataacattgttt |
34623823 |
T |
|
| Q |
101 |
ttgcaagctaagtgagactcaagctgaaggtttgaagcctattcttgaagatcaagaatcaagggtgggtttgattgaagaaggttaagccaaagcatcg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34623822 |
ttgcaaa-----tgagactcaagctgaaggtttgaagcctattcttgaagatcaagaatcaagggtgggtttgatcgaagaaggttaagccaaagcatcg |
34623728 |
T |
|
| Q |
201 |
atttaaactttta--nnnnnnngacaaaatctaaacattatttatgttagcggcaaattgatacatgtgcactagcatagagatatcaaaatctccgtaa |
298 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34623727 |
atctaaacttttatttatttttgacaaaatctaaacattatttatgttagcggcaaattgatacatgtgcaccagcatagagatatcaaaatctccgtaa |
34623628 |
T |
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| Q |
299 |
caccaa |
304 |
Q |
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|||||| |
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| T |
34623627 |
caccaa |
34623622 |
T |
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