View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_low_1 (Length: 624)
Name: NF8169_low_1
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_1 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 197 - 485
Target Start/End: Original strand, 44285603 - 44285890
Alignment:
| Q |
197 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
296 |
Q |
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| T |
44285603 |
ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct |
44285702 |
T |
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| Q |
297 |
agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg |
396 |
Q |
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| T |
44285703 |
agttcttctcccaatctcggactcgaccttttagccgattcgcacctttactctctgtctcaatcaattcggtcagatcaatagagaagtcaggcactcg |
44285802 |
T |
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| Q |
397 |
atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagcttct |
485 |
Q |
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| T |
44285803 |
attgacttaaaggaagattccg-ccgtaaattgattgatcaatgttaccgggaagcagcaacagagatggattgagtactaaagcttct |
44285890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 197 - 482
Target Start/End: Complemental strand, 44070410 - 44070126
Alignment:
| Q |
197 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
296 |
Q |
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| T |
44070410 |
ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct |
44070311 |
T |
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| Q |
297 |
agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg |
396 |
Q |
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| T |
44070310 |
agttcttctcccaatctcggactcagccgtttagccggtttgcacctttactctctgtctcaatctagccggtcagatcaatagagaagtcaggcacttg |
44070211 |
T |
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| Q |
397 |
atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagct |
482 |
Q |
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| T |
44070210 |
attgacttaaaggaaggttccg-ccgttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagct |
44070126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 49238071 - 49237921
Alignment:
| Q |
1 |
cttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactctttggtcca |
100 |
Q |
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| T |
49238071 |
cttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcggagagccactctttggtcca |
49237972 |
T |
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| Q |
101 |
ataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg |
151 |
Q |
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| T |
49237971 |
ataaagagacagatcatcatccatagaatctatctagaaataggcagtctg |
49237921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6199 - 6329
Alignment:
| Q |
1 |
cttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactctttggtcca |
100 |
Q |
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| T |
6199 |
cttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactctttggtcca |
6298 |
T |
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| Q |
101 |
ataaagagacagatcagcatccatagaatct |
131 |
Q |
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| T |
6299 |
ataaagagacagatcagcatccatagaatct |
6329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 16443843 - 16443749
Alignment:
| Q |
387 |
caggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagct |
482 |
Q |
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|||||||| ||| ||||||||||||||||||||| || |||| ||||| ||||| || ||||||||||||||||||||||||||| |||||||| |
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| T |
16443843 |
caggcacttgattgacttaaaggaaggttccgcc-gttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagct |
16443749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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