View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8169_low_14 (Length: 317)
Name: NF8169_low_14
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 29570922 - 29570626
Alignment:
| Q |
1 |
agtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29570922 |
agtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggc |
29570823 |
T |
|
| Q |
101 |
cttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtcaaagtattgaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29570822 |
cttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtcaaagtattgaaaa |
29570723 |
T |
|
| Q |
201 |
ctttatactaaccacttcaattaaaaatgcaaac-nnnnnnnnnactttaccatttcaccaaaataatgaagttaaagaaacatatacaagctcaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29570722 |
ctttatactaaccacttcaattaaaaatgcaaacttttttttttactttaccatttcaccaaaataatgaagttaaagaaacatatacaagctcaaa |
29570626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 44674082 - 44674026
Alignment:
| Q |
101 |
cttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgca |
157 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||||| |||| ||| |||||| |
|
|
| T |
44674082 |
cttaggtaatttatccatctcaatctgcaactcttgccacatcttagcaagcctgca |
44674026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 33378814 - 33378670
Alignment:
| Q |
15 |
gaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggccttaggtaatttgt |
114 |
Q |
| |
|
|||| ||||| || |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
33378814 |
gaaataacctgttcccaagttgagcatgaagatcaatcaccattttctcttcatattcagataaaagtcctctttttaaatctggcctcaagtaatttgt |
33378715 |
T |
|
| Q |
115 |
ccatctcaatctgcaactttttccacaccttaacaaccctgcatg |
159 |
Q |
| |
|
|||||| | ||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
33378714 |
ccatctaagtctacaactttttccacaccttaatagccctgcatg |
33378670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 3616471 - 3616412
Alignment:
| Q |
96 |
ctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctg |
155 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||| || | |||||||||||| |||| |
|
|
| T |
3616471 |
ctggccttagataatttgtccatctaagtctgcaactcttactacaccttaacaaacctg |
3616412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University