View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_low_20 (Length: 252)
Name: NF8169_low_20
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_20 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2369163 - 2369410
Alignment:
| Q |
1 |
agttggatgtttgcaatgaacaattattgttgtatgtatatgaa-gcccttaactttaatttatttaggtctgtttggattctcttattaaaacttgtta |
99 |
Q |
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| T |
2369163 |
agttggatgtttgcaatgaacaattattgttgtatgtatatgaaagcccttaacttta-----tttaggtctgtttggattgtcttattaaaacttgtta |
2369257 |
T |
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| Q |
100 |
tgaagatatcttatgacatgtttctcattctcaatcacggccaatttttggaacccattatcagaatctattttgcctccgtatccccaatgttatttta |
199 |
Q |
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| T |
2369258 |
tgaagatatcttatgacatgtttctcattctcaatcacggccaatttctggaacccattatcataatctattttgcctccatatccccaatgttatttta |
2369357 |
T |
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| Q |
200 |
agaggaatcatgaacgatgctgctcctcatctctttcttatcacaatctcatc |
252 |
Q |
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| T |
2369358 |
agaggaatcatgaacgatgctgctcctcatctctttcttatcacaatctcatc |
2369410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 124 - 252
Target Start/End: Original strand, 36697896 - 36698024
Alignment:
| Q |
124 |
tcattctcaatcacggccaatttttggaacccattatcagaatctattttgcctccgtatccccaatgttattttaagaggaatcatgaacgatgctgct |
223 |
Q |
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| T |
36697896 |
tcattctcaatcacggccaatttctggaacccattatcagaatctattttgcctccatatcctccatgttattttaagaggaatcatgaacgatgttgct |
36697995 |
T |
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| Q |
224 |
cctcatctctttcttatcacaatctcatc |
252 |
Q |
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| T |
36697996 |
cctcatctctttcttatcacaatctcatc |
36698024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 20104598 - 20104689
Alignment:
| Q |
154 |
ccattatcagaatctattttgcctccgtatccccaatgttattttaagaggaatcatgaacgatgctgctcctcatctctttcttatcacaat |
246 |
Q |
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| T |
20104598 |
ccattatcgaaatctatttggcctccatatcccca-tgttattttaagaagaatcatggaggatgctgctcctcgtctctttcttatcacaat |
20104689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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