View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_low_22 (Length: 240)
Name: NF8169_low_22
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 20185240 - 20185174
Alignment:
| Q |
20 |
aaatgggttgggttgaaacaaaaacatgtaaagcaaaggaagagataaagagggagatgaagaagag |
86 |
Q |
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| T |
20185240 |
aaatgggttgggttgaaacaaaaacatttaaagcaaaggaagagataaagagggagatgaagaagag |
20185174 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 20185070 - 20185035
Alignment:
| Q |
191 |
catagcaatcactgatagctatattcataaactcct |
226 |
Q |
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| T |
20185070 |
catagcaatcactgatagctatattcataaactcct |
20185035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 40487077 - 40487013
Alignment:
| Q |
18 |
tgaaatgggttgggttgaaacaaaaacatgtaaagcaaaggaagagataaagagggagatgaaga |
82 |
Q |
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||||||||| ||||||||||||| || |||| || ||||| || |||| |||| ||||||||||| |
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| T |
40487077 |
tgaaatgggatgggttgaaacaagaaaatgtgaaacaaagaaatagatgaagaaggagatgaaga |
40487013 |
T |
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