View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8169_low_25 (Length: 234)

Name: NF8169_low_25
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8169_low_25
NF8169_low_25
[»] chr4 (6 HSPs)
chr4 (13-212)||(3649888-3650087)
chr4 (61-194)||(26720260-26720393)
chr4 (152-212)||(38467687-38467748)
chr4 (61-183)||(14586743-14586865)
chr4 (149-212)||(32651243-32651307)
chr4 (148-212)||(41810188-41810253)
[»] chr6 (3 HSPs)
chr6 (13-212)||(33053992-33054200)
chr6 (66-194)||(27444150-27444278)
chr6 (135-212)||(31444788-31444865)
[»] scaffold0003 (2 HSPs)
scaffold0003 (66-212)||(36899-37045)
scaffold0003 (66-194)||(43083-43211)
[»] chr3 (3 HSPs)
chr3 (66-216)||(31687883-31688033)
chr3 (148-212)||(19766031-19766095)
chr3 (148-212)||(52130806-52130871)
[»] scaffold0152 (1 HSPs)
scaffold0152 (126-212)||(10212-10298)
[»] chr8 (3 HSPs)
chr8 (134-212)||(19962047-19962125)
chr8 (152-212)||(35349008-35349069)
chr8 (135-212)||(44663643-44663720)
[»] chr2 (1 HSPs)
chr2 (135-212)||(4453795-4453872)
[»] scaffold0005 (1 HSPs)
scaffold0005 (61-183)||(230509-230631)
[»] chr7 (2 HSPs)
chr7 (152-212)||(21820151-21820211)
chr7 (171-212)||(7841304-7841345)
[»] chr1 (4 HSPs)
chr1 (149-212)||(17726049-17726113)
chr1 (148-209)||(14184705-14184767)
chr1 (171-212)||(22368195-22368236)
chr1 (155-212)||(31771354-31771411)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 3650087 - 3649888
Alignment:
Q  13 gaagcagagactgcattatgtggcgtaaggcaaggagggaaattttccgtgtgttgtgatttgtgctagccataagcaagatcagatgtaggactcataa 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||    
T  3650087 gaagcacagactgcattatgtggcgtaaggcaaggagggaaattttccgtgtgttgtgatttgtgctagccataaacaagatcagatgtagggttcataa 3649988  T
Q  113 ttaagcagcacccaaagatgttgatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649987 ttaagcggcacccaaagatgttgatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 3649888  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 26720393 - 26720260
Alignment:
Q  61 gtgtgttgtgatttgtgctagccataagcaagatcagatgtaggactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcg 160  Q
    |||| |||||||||||||||||||  |||||||| |||| || | || |||| ||||  |  ||||||| ||| |||||||||| |||||||| ||||||    
T  26720393 gtgtattgtgatttgtgctagccaacagcaagattagatctatggctgataaataagtggtgcccaaaggtgtagatccaagggctaggattgtttggcg 26720294  T
Q  161 cctaaaaaagtagatttagggttttaagtgttaa 194  Q
    |||||||||||||  |||||||||  ||||||||    
T  26720293 cctaaaaaagtaggattagggtttggagtgttaa 26720260  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 38467687 - 38467748
Alignment:
Q  152 tgattggcgcctaaaa-aagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  38467687 tgattggcgcctaaaataagtagaattagggttttaagtgttaattggagtgttaactagga 38467748  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 14586743 - 14586865
Alignment:
Q  61 gtgtgttgtgatttgtgctagccataagcaagatcagatgtaggactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcg 160  Q
    |||| |||||||||||||||| ||  |  |||||||||| || | || |||| ||||  || ||||||| ||| |||||||||| |||||||| ||||||    
T  14586743 gtgtattgtgatttgtgctagtcagcaaaaagatcagatctacggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcg 14586842  T
Q  161 cctaaaaaagtagatttagggtt 183  Q
    ||||||||||||| |||||||||    
T  14586843 cctaaaaaagtaggtttagggtt 14586865  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 32651243 - 32651307
Alignment:
Q  149 gattgattggcgcctaaaaaagt-agatttagggttttaagtgttaattggagtgttaactagga 212  Q
    ||||| ||||||||||||||  | ||| ||||||||||||||| |||||||||||||||||||||    
T  32651243 gattgtttggcgcctaaaaatcttagaattagggttttaagtgataattggagtgttaactagga 32651307  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 41810253 - 41810188
Alignment:
Q  148 ggattgattggcgcctaaaaaagt-agatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||||||||| ||||||  | | | ||||||||||||||| |||||||||||||||||||||    
T  41810253 ggattgattggcgcttaaaaatcttaaaattagggttttaagtggtaattggagtgttaactagga 41810188  T

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Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 33053992 - 33054200
Alignment:
Q  13 gaagcagagactgcattatgtggcgtaaggcaaggagggaaa---------ttttccgtgtgttgtgatttgtgctagccataagcaagatcagatgtag 103  Q
    |||||| || |||||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33053992 gaagcacagtctgcattatgtggcgtaaggtaaggagggaaaatttgaaaattttccgtgtgttgtgatttgtgctagccataagcaagattagatgtag 33054091  T
Q  104 gactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgt 203  Q
    | ||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  33054092 ggctcataattaagtggtgcccaaagatgttgatccaagggttaggattgattggcgcctaaaaaagtaggtttagggttttaagtgttaattgtagtgt 33054191  T
Q  204 taactagga 212  Q
    ||| |||||    
T  33054192 taattagga 33054200  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 27444278 - 27444150
Alignment:
Q  66 ttgtgatttgtgctagccataagcaagatcagatgtaggactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcgcctaa 165  Q
    ||||||||||||| |||||  ||||||||||||| || | || |||| ||||  || ||||||| ||| |||||||||| |||||||| |||||||||||    
T  27444278 ttgtgatttgtgccagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgcctaa 27444179  T
Q  166 aaaagtagatttagggttttaagtgttaa 194  Q
    ||||||||| |||||||||  ||||||||    
T  27444178 aaaagtagaattagggtttggagtgttaa 27444150  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 31444865 - 31444788
Alignment:
Q  135 gatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||||| ||  ||||||||||||||||||   |||| ||||||||||||||  |||||||||||||||||||||    
T  31444865 gatccaagggctaatattgattggcgcctaaaattatagaattagggttttaagtagtaattggagtgttaactagga 31444788  T

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Target: scaffold0003 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 36899 - 37045
Alignment:
Q  66 ttgtgatttgtgctagccataagcaagatcagatgtaggactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcgcctaa 165  Q
    |||||||||||||||||||| ||||||||||||| || | || |||| ||||  ||| |||||| ||| |||||||||| |||||||| |||||||||||    
T  36899 ttgtgatttgtgctagccatcagcaagatcagatctatggctgataaataagtggcaaccaaaggtgtagatccaagggctaggattgtttggcgcctaa 36998  T
Q  166 aaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    ||||| ||| ||||| ||| ||||||||||||||||||||| |||||    
T  36999 aaaagaagaattaggatttgaagtgttaattggagtgttaattagga 37045  T

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Target: scaffold0003; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 43083 - 43211
Alignment:
Q  66 ttgtgatttgtgctagccataagcaagatcagatgtaggactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcgcctaa 165  Q
    ||||||||||||| |||||  ||||||||||||| || | || |||| ||||  || ||||||| ||| |||||||||| |||||||| |||||||||||    
T  43083 ttgtgatttgtgcaagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgcctaa 43182  T
Q  166 aaaagtagatttagggttttaagtgttaa 194  Q
    ||||||||| |||||||||  ||||||||    
T  43183 aaaagtagaattagggtttggagtgttaa 43211  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 31688033 - 31687883
Alignment:
Q  66 ttgtgatttgtgctagccataagcaagatcagatgtaggactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcgcctaa 165  Q
    |||||||||||||||||||  ||||||||||||| || | || |||| ||||  || ||||||| ||| |||||||||| |||||||| |||||||||||    
T  31688033 ttgtgatttgtgctagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgcctaa 31687934  T
Q  166 aaaagtagatttagggttttaagtgttaattggagtgttaactaggactag 216  Q
    ||||||||| |||||||||  ||||| | ||||||||||||||||||||||    
T  31687933 aaaagtagaattagggtttggagtgtaagttggagtgttaactaggactag 31687883  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 19766095 - 19766031
Alignment:
Q  148 ggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||| |||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||    
T  19766095 ggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaattggagtgttaactagga 19766031  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 52130871 - 52130806
Alignment:
Q  148 ggattgattggcgcctaaaaaagt-agatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||||||||||||||||  | ||| ||||||||||||||| |||||||||||||| ||||||    
T  52130871 ggattgattggcgcctaaaaatcttagaattagggttttaagtggtaattggagtgttacctagga 52130806  T

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Target: scaffold0152 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 10298 - 10212
Alignment:
Q  126 aaagatgttgatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||| ||| |||||||||| |||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||    
T  10298 aaaggtgtagatccaagggctaggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaattggagtgttaactagga 10212  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 19962125 - 19962047
Alignment:
Q  134 tgatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||| || ||| | ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  19962125 tgatccaatggctagtactgattggcgcctaaaaaagtaaaattagggttttaagtgttaatttgagtgttaactagga 19962047  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 35349069 - 35349008
Alignment:
Q  152 tgattggcgcctaaaa-aagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  35349069 tgattggcgcctaaaataagtagaattaggattttaagtgttaattggagtgttaactagga 35349008  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 44663643 - 44663720
Alignment:
Q  135 gatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||||| ||  ||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||||||    
T  44663643 gatccaagggctaatattgattggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactagga 44663720  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 4453872 - 4453795
Alignment:
Q  135 gatccaagggttaggattgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||||||||||||  ||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||||||    
T  4453872 gatccaagggttaatattgattggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactagga 4453795  T

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Target: scaffold0005 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 230631 - 230509
Alignment:
Q  61 gtgtgttgtgatttgtgctagccataagcaagatcagatgtaggactcataattaagcagcacccaaagatgttgatccaagggttaggattgattggcg 160  Q
    |||| |||||||||||||||| ||  |  |||||||||| || | || |||| ||||  || ||||||| ||| |||||||||| |||||||| ||||||    
T  230631 gtgtattgtgatttgtgctagtcagcaaaaagatcagatctacggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcg 230532  T
Q  161 cctaaaaaagtagatttagggtt 183  Q
    ||||||||||||| |||||||||    
T  230531 cctaaaaaagtaggtttagggtt 230509  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 21820151 - 21820211
Alignment:
Q  152 tgattggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||    
T  21820151 tgattggcgcctaaaaatgtagaattatggttttaagtgttaattggagtgttaattagga 21820211  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 7841345 - 7841304
Alignment:
Q  171 tagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  7841345 tagaattagggttttaagtggtaattagagtgttaactagga 7841304  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 17726113 - 17726049
Alignment:
Q  149 gattgattggcgcctaaaaaagt-agatttagggttttaagtgttaattggagtgttaactagga 212  Q
    ||||| ||||||||||||||  | ||| ||||||||||||||| |||||||||||||||||||||    
T  17726113 gattgtttggcgcctaaaaatcttagaattagggttttaagtgataattggagtgttaactagga 17726049  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 14184767 - 14184705
Alignment:
Q  148 ggattgattggcgcctaaaaaagt-agatttagggttttaagtgttaattggagtgttaacta 209  Q
    |||||||||||||||||||||  | ||| |||| |||||||||| ||||| ||||||||||||    
T  14184767 ggattgattggcgcctaaaaatcttagaattagagttttaagtggtaattagagtgttaacta 14184705  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 22368195 - 22368236
Alignment:
Q  171 tagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    |||| ||||||||||||||| |||||| ||||||||||||||    
T  22368195 tagaattagggttttaagtgataattgaagtgttaactagga 22368236  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 31771354 - 31771411
Alignment:
Q  155 ttggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactagga 212  Q
    ||||||||||||| || ||| ||||||||   ||||||| ||||||||||||||||||    
T  31771354 ttggcgcctaaaacaggagaattagggttgggagtgttatttggagtgttaactagga 31771411  T

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