View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8169_low_27 (Length: 205)

Name: NF8169_low_27
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8169_low_27
NF8169_low_27
[»] chr8 (2 HSPs)
chr8 (61-188)||(27513624-27513751)
chr8 (102-188)||(8675159-8675245)
[»] chr1 (2 HSPs)
chr1 (16-188)||(39210054-39210210)
chr1 (61-184)||(24036791-24036918)
[»] chr3 (1 HSPs)
chr3 (90-186)||(9461193-9461298)
[»] chr2 (1 HSPs)
chr2 (71-183)||(38950770-38950885)
[»] chr6 (2 HSPs)
chr6 (135-187)||(18331979-18332031)
chr6 (66-133)||(18331878-18331945)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 27513624 - 27513751
Alignment:
Q  61 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 160  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  161 gcttgcagatagtttcatcaacttccct 188  Q
    |||||||| |||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttccct 27513751  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 8675245 - 8675159
Alignment:
Q  102 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccct 188  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttccct 8675159  T

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Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 39210210 - 39210054
Alignment:
Q  16 cacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattag 115  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210210 cacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattag 39210111  T
Q  116 ttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccct 188  Q
    |||                |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39210110 ttc----------------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttccct 39210054  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 24036791 - 24036918
Alignment:
Q  61 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 159  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  160 ----ggcttgcagatagtttcatcaactt 184  Q
        |||||||||||||||||||||||||    
T  24036890 ggatggcttgcagatagtttcatcaactt 24036918  T

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Target: chr3 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 9461298 - 9461193
Alignment:
Q  90 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 180  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  181 acttcc 186  Q
    ||||||    
T  9461198 acttcc 9461193  T

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Target: chr2 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  71 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 164  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  165 gcagatagtttcatcaact 183  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  135 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 187  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  66 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 133  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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