View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_low_29 (Length: 202)
Name: NF8169_low_29
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 29520787 - 29520965
Alignment:
| Q |
12 |
cagagaagaaagttatcattatccatcggcttcatcagattcttgagcctttcatgctcaggcgtcgtgttgaagaggttgaaggctcgctaccaccaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29520787 |
cagagaagaaagttatcattatccatcggcttcatcagattcttgagcctttcatgctcaggcgtcgtgttgaagaggttgaaggctcgctaccaccaaa |
29520886 |
T |
|
| Q |
112 |
ggtttgactacgactcttacccttttactctacagtgtggcataattctgnnnnnnnnaatgaacggaataatcctgat |
190 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29520887 |
ggtttgactacgactcttaaccttttactctacagtgtggcataattctgttttttttaatgaacggaataatcctgat |
29520965 |
T |
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Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 11272114 - 11272012
Alignment:
| Q |
12 |
cagagaagaaagttatcattatccatcggcttcatcagattcttgagcctttcatgctcaggcgtcgtgttgaagaggttgaaggctcgctaccaccaaa |
111 |
Q |
| |
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||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||| || |||||||| || |||||||| ||||||||||| |
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| T |
11272114 |
cagagaagaaagtcatcacaatccatcgacttcatcagattcttgaacctttcatgctcaggcgacgagttgaagatgtcgaaggctcactaccaccaaa |
11272015 |
T |
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| Q |
112 |
ggt |
114 |
Q |
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||| |
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| T |
11272014 |
ggt |
11272012 |
T |
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