View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8169_low_6 (Length: 463)
Name: NF8169_low_6
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 6396118 - 6396546
Alignment:
| Q |
14 |
tgagatgaatgggaaaaacttatgatgtaatgcaaatcggtaagaagcaaaataattctatctttatttggtacaagggcttattaattttggaagggta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6396118 |
tgagatgaatgggaaaaacttatgatgtaatgcgaatcggtaagaagcaaaataattctatctatatttcgtacaagggcttattaattttggaagggta |
6396217 |
T |
|
| Q |
114 |
atttttaagcagacactcacattttcaatgtctttttaatgtttcattggttgcgaaataacttnnnnnnncttattcaattaaaaattcaagtatacta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
6396218 |
atttttaagcagacactcacattttcaatgtctttttaatgtttcattggttgcgaaataacttaaaaaaacttattcaattaaaaattcaagtata--a |
6396315 |
T |
|
| Q |
214 |
tatatattatgaggaatactatcaacacacatttcatattcttgttcttggaaaaatattcaaagcctcatttaacattcttagcctctctgtctctaca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6396316 |
tatatattatgaggaatactatcaacacacatttcatattcttgttcatggaaaaatattcaaagcctcatttaacattcttagcctctctgtctctaca |
6396415 |
T |
|
| Q |
314 |
taaaagtcacaataacgggatagtccccaagggatttactaattgtgttgaggagagaactattatattaatcatccacgtaggatattaaaaagtacaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
6396416 |
taaaagtcacaataacgggatagtccccaagggatttactaattgtgttgaggagagaactattatattaatcatccacataagatattaaaaagtacaa |
6396515 |
T |
|
| Q |
414 |
tcaagaaagtgttcatggcaaaggactaaat |
444 |
Q |
| |
|
|||||||||| | |||||||||||||||||| |
|
|
| T |
6396516 |
tcaagaaagtttccatggcaaaggactaaat |
6396546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 12580943 - 12580998
Alignment:
| Q |
333 |
atagtccccaagggatttactaattgtgttgaggagagaactattatattaatcat |
388 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12580943 |
atagtccccaactgatctacaaattgtgttgaggagagaactatcatattaatcat |
12580998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 12496490 - 12496439
Alignment:
| Q |
337 |
tccccaagggatttactaattgtgttgaggagagaactattatattaatcat |
388 |
Q |
| |
|
|||||| | ||| ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12496490 |
tccccatgtgatctacaaattgtgttgaggagagaactatcatattaatcat |
12496439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University