View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8169_low_7 (Length: 406)
Name: NF8169_low_7
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 48714544 - 48714162
Alignment:
| Q |
7 |
aaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgcttatattcaagactagagggagcgcttaatatcagcatt |
106 |
Q |
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| T |
48714544 |
aaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgcttatattcaagaccaaaggaagcgcttagtatcaacatt |
48714445 |
T |
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| Q |
107 |
tcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaagacaaaaactgtt |
206 |
Q |
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| T |
48714444 |
tcatattgaaaaacgtgagaattgataattatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaagacaaaaactgtt |
48714345 |
T |
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| Q |
207 |
aaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagtcatagataagaaggaaaggcaatagaacagtaccaaaaacgtcg |
306 |
Q |
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| T |
48714344 |
aaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagccatagataagaaggaaaggcaatagaacagtaccaaaaatgtcg |
48714245 |
T |
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| Q |
307 |
gagacgaggagaatgacgaaggtgcaaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagc |
389 |
Q |
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| T |
48714244 |
gagacgaggagaatgacgaaggtgcaaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagc |
48714162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 47165824 - 47165691
Alignment:
| Q |
60 |
acttttgcttatattcaagactagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattgggg |
159 |
Q |
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| T |
47165824 |
acttttgttcatatttaagaccagagagagcgtttagtatcaacatttcatattgaaaa-cgtgagaattggtaatcatcatcataccttaaaattgggg |
47165726 |
T |
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| Q |
160 |
ctttatatcctacaaaacaaattaagcatgtgaag |
194 |
Q |
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| T |
47165725 |
ctttatatcctacaaaacaaattaagcaagtgaag |
47165691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 47165666 - 47165602
Alignment:
| Q |
195 |
acaaaaactgttaaacatgtg---tagatgcattcaatatatgaaaccatgacctcctcaaaata |
256 |
Q |
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| T |
47165666 |
acaaaaactgttcaacatgtgatgtagatgcattcaatatatgaaaccatgacatactcaaaata |
47165602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 48695958 - 48695896
Alignment:
| Q |
327 |
ggtgcaaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagc |
389 |
Q |
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|||| |||||||||| |||||||| |||||||||| |||||||| ||| ||||||||||||| |
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| T |
48695958 |
ggtggaaagaggagagccagtgaggtaagcatcaagaccaccaattttttcaacatggccagc |
48695896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 48696137 - 48696083
Alignment:
| Q |
140 |
atcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaag |
194 |
Q |
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| T |
48696137 |
atcataccttataattggagattcatatcctacaaaacaaataaagcatgtgaag |
48696083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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