View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8169_low_9 (Length: 377)
Name: NF8169_low_9
Description: NF8169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8169_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 14966074 - 14965731
Alignment:
| Q |
15 |
gagaagaaggcaacaactgccaaaaatgtactactcaaagatcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
114 |
Q |
| |
|
|||||||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14966074 |
gagaagaatgcagcaactgccgaaagtgtactactcaaaagtcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
14965975 |
T |
|
| Q |
115 |
taatggtacttatactttttgttctaattttaacctagaagagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctaccag |
214 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14965974 |
taatggtactta--ctttttattctaattttaacctagaaaagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctactag |
14965877 |
T |
|
| Q |
215 |
taaaaacaaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttatgccaagatccctcaatcgcacctccaatcatacta |
314 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14965876 |
taaaaataaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttctgccaagatccctcaatcgcacctccgatcatacta |
14965777 |
T |
|
| Q |
315 |
gacaaacaatttactacatcatattattttctaatatgccatatat |
360 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14965776 |
gacaaacaatttactacatcatattatgttctaatatgccatatat |
14965731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University