View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_high_12 (Length: 235)
Name: NF8170_high_12
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 41066756 - 41066555
Alignment:
| Q |
19 |
agatcgcgaaaaatagtagttggttcaagttctgctacgctagccactatttgacagcaatatgtactaattagtgtatcatggaacaataacaatatgt |
118 |
Q |
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| T |
41066756 |
agatcgcgaaaaacagtagttggttcaagttctgctacgctagccactatttgacagcaatgtgtactaattagtgtatcatggaacaataacaatatgt |
41066657 |
T |
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| Q |
119 |
tcatatactgcaacgctatagcattttaatgttgctaattgcaatggccgctatttgataacattcgtcttgatattgcaagagaatactcaagttaata |
218 |
Q |
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| T |
41066656 |
tcatatactgcaacgctatagcattttagtgttgctaattgcaatggccgctatttgataacattcgtcttgatattgcaagagactactcaagttaata |
41066557 |
T |
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| Q |
219 |
tt |
220 |
Q |
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|| |
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| T |
41066556 |
tt |
41066555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 24942555 - 24942496
Alignment:
| Q |
65 |
ctatttgacagcaatatgtactaattagtgtatcatggaacaataacaatatgttcatat |
124 |
Q |
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| T |
24942555 |
ctatttgacaacattttgtactaattagcgtatcatggaacaatagcgatctgttcatat |
24942496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 38622874 - 38622955
Alignment:
| Q |
59 |
tagccactatttgacagcaatatgtactaattagtgtatcatggaacaataacaatatgttcatatactgcaacgctatagc |
140 |
Q |
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| T |
38622874 |
tagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgctacgctatagc |
38622955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 4787978 - 4787917
Alignment:
| Q |
59 |
tagccactatttgacagcaatatgtactaattagtgtatcatggaacaataacaatatgttc |
120 |
Q |
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|||||||||||||||| || | |||||||| ||||||||||| |||||||| |||||||| |
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| T |
4787978 |
tagccactatttgacaacattttgtactaaatagtgtatcattagacaataacgatatgttc |
4787917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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