View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8170_high_3 (Length: 435)

Name: NF8170_high_3
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8170_high_3
NF8170_high_3
[»] chr2 (2 HSPs)
chr2 (14-334)||(18031190-18031506)
chr2 (384-424)||(18031100-18031140)
[»] chr4 (1 HSPs)
chr4 (159-322)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (160-334)||(29642020-29642198)
chr3 (240-290)||(4803977-4804027)
chr3 (243-290)||(10535703-10535750)
chr3 (123-157)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (259-328)||(22002453-22002522)
chr7 (14-139)||(22002144-22002269)
[»] chr8 (2 HSPs)
chr8 (234-330)||(32309433-32309529)
chr8 (17-154)||(32309130-32309266)
[»] chr6 (5 HSPs)
chr6 (234-330)||(33364663-33364759)
chr6 (17-154)||(33364360-33364496)
chr6 (122-157)||(22208490-22208525)
chr6 (115-157)||(16592721-16592763)
chr6 (105-155)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (234-330)||(30330131-30330227)
chr1 (17-154)||(30330394-30330530)
chr1 (243-290)||(25626139-25626186)
chr1 (123-157)||(9934245-9934279)
chr1 (105-155)||(24208117-24208167)
chr1 (105-155)||(45027897-45027947)
chr1 (105-155)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (243-290)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 18031506 - 18031190
Alignment:
Q  14 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaata 113  Q
    ||||||||||  ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||     |||||||||    
T  18031506 cagagacaccagaagactttaagttgagaataggagggacgtttttggtaaaaaaattgtatttggtgtttgaagagctaattgtt-----ggaagaata 18031412  T
Q  114 attaacaaataagtagccatatgaagagcatgatgccaaaatgatgtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttacattatga 213  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||    
T  18031411 attaacaaataagtagtcatatgaagagcatgatgtcaaaaagatgtgaggtgtggggacaagaaaattggaagctcattccattatatttacattatga 18031312  T
Q  214 aaagaa-tattgtcatattgttttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 312  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18031311 aaagaagtattgtcatattcttttctgttatcacattgaaaacattttatatctcttttaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 18031212  T
Q  313 aataagcttgagatttatgtgc 334  Q
    ||||||||||||||||||||||    
T  18031211 aataagcttgagatttatgtgc 18031190  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 18031140 - 18031100
Alignment:
Q  384 gagtaacgatgaccaccaggaccaagagttgctgatgtcca 424  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  18031140 gagtaacgatgaccaccatgaccaagagttgttgatgtcca 18031100  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 159 - 322
Target Start/End: Complemental strand, 55156642 - 55156474
Alignment:
Q  159 gtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaa 253  Q
    |||||||||| | ||||||||||   |||||||||||||| ||||||||    ||||  |||||| |||||||||||| ||||| |||||||| ||||||    
T  55156642 gtgaggtgtgaggacaagaaaaccagaagctcattccattttgtttacagaaattatagaaagaagtattgtcatattcttttccgttatcacattgaaa 55156543  T
Q  254 acattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttg 322  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  55156542 acattttatatctctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaataaacttg 55156474  T

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Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 160 - 334
Target Start/End: Complemental strand, 29642198 - 29642020
Alignment:
Q  160 tgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaata-ttgtcatattgttttctgttatcacgttgaaaa 254  Q
    ||||||||| | |||||||||||| |||||| ||||||| ||||||||    ||||| |||||| | |||||||||| ||||| |||||||| |||||||    
T  29642198 tgaggtgtgaggacaagaaaactggaagctc-ttccattttgtttacaaagattatggaaagaagaattgtcatattattttccgttatcacattgaaaa 29642100  T
Q  255 cattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 334  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  29642099 cattgtatatctcttttaaattgtgttttaatgtgattgcgaaaataaagaaaagtggaaaaagcttgagatttgtgtgc 29642020  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 4803977 - 4804027
Alignment:
Q  240 ttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    ||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  4803977 ttatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 4804027  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 10535703 - 10535750
Alignment:
Q  243 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  10535703 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 10535750  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 48101527 - 48101561
Alignment:
Q  123 taagtagccatatgaagagcatgatgccaaaatga 157  Q
    ||||||||||| |||||||||||||||||||||||    
T  48101527 taagtagccatttgaagagcatgatgccaaaatga 48101561  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 22002453 - 22002522
Alignment:
Q  259 ttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagattt 328  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22002453 ttatatctctttcaaattttgttttaatttgattaggaaaatgaataaaagtggaataagcttgagattt 22002522  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 22002144 - 22002269
Alignment:
Q  14 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgt-ttggttggaagaat 112  Q
    ||||||||||| | ||||||||| ||||||| ||||| | || ||| | |||  ||| ||| |||| |||| |||||||| || | ||||||||||||||    
T  22002144 cagagacacccgatgactttaagatgagaataggaggaa-atattttgataaggaatcgtagttggggttttaagagctacttatgttggttggaagaat 22002242  T
Q  113 aattaacaaataagtagccatatgaag 139  Q
    | ||||||||||||| | |||||||||    
T  22002243 atttaacaaataagtggtcatatgaag 22002269  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 32309433 - 32309529
Alignment:
Q  234 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 330  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||| |||| | |||||| |||||||    
T  32309433 tttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagcttgtgatttat 32309529  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 32309130 - 32309266
Alignment:
Q  17 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 116  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  32309130 agacatccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 32309228  T
Q  117 aacaaataagtagccatatgaagagcatgatgccaaaa 154  Q
    || | |||||||||||| ||||| || |||||||||||    
T  32309229 aagagataagtagccatttgaagtgcgtgatgccaaaa 32309266  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 33364663 - 33364759
Alignment:
Q  234 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 330  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  33364663 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 33364759  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 33364360 - 33364496
Alignment:
Q  17 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 116  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  33364360 agacaaccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 33364458  T
Q  117 aacaaataagtagccatatgaagagcatgatgccaaaa 154  Q
    || | |||||||||||| ||||| || |||||||||||    
T  33364459 aagagataagtagccatttgaagtgcgtgatgccaaaa 33364496  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 22208490 - 22208525
Alignment:
Q  122 ataagtagccatatgaagagcatgatgccaaaatga 157  Q
    |||||||||||| |||||||||||||||||||||||    
T  22208490 ataagtagccatttgaagagcatgatgccaaaatga 22208525  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 16592763 - 16592721
Alignment:
Q  115 ttaacaaataagtagccatatgaagagcatgatgccaaaatga 157  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  16592763 ttaacatataagttgccatgtgaagagcatgatgccaaaatga 16592721  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 33164183 - 33164133
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  33164183 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 33164133  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 30330227 - 30330131
Alignment:
Q  234 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 330  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  30330227 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 30330131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 30330530 - 30330394
Alignment:
Q  17 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 116  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  30330530 agacagccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 30330432  T
Q  117 aacaaataagtagccatatgaagagcatgatgccaaaa 154  Q
    || | |||||||||||| ||||| || |||||||||||    
T  30330431 aagagataagtagccatttgaagtgcgtgatgccaaaa 30330394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 25626139 - 25626186
Alignment:
Q  243 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  25626139 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 25626186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 9934245 - 9934279
Alignment:
Q  123 taagtagccatatgaagagcatgatgccaaaatga 157  Q
    ||||||||||| |||||||||||||||||||||||    
T  9934245 taagtagccatttgaagagcatgatgccaaaatga 9934279  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 24208167 - 24208117
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  24208167 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 24208117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 45027947 - 45027897
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45027947 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45027897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 45032795 - 45032745
Alignment:
Q  105 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 155  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45032795 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45032745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 89687 - 89640
Alignment:
Q  243 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 290  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  89687 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 89640  T

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