View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8170_high_4 (Length: 426)

Name: NF8170_high_4
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8170_high_4
NF8170_high_4
[»] chr6 (29 HSPs)
chr6 (136-285)||(25549419-25549566)
chr6 (136-285)||(26087174-26087321)
chr6 (318-407)||(26052485-26052573)
chr6 (318-407)||(26072538-26072626)
chr6 (136-299)||(33869603-33869770)
chr6 (165-308)||(29300410-29300554)
chr6 (208-311)||(25490543-25490647)
chr6 (52-141)||(25516980-25517069)
chr6 (227-311)||(25526556-25526641)
chr6 (145-204)||(34257873-34257932)
chr6 (318-407)||(26051369-26051457)
chr6 (318-407)||(26051555-26051643)
chr6 (318-407)||(26051741-26051829)
chr6 (318-407)||(26051927-26052015)
chr6 (318-407)||(26052113-26052201)
chr6 (318-407)||(26052299-26052387)
chr6 (331-395)||(25490434-25490498)
chr6 (75-141)||(25525231-25525295)
chr6 (54-141)||(26047659-26047746)
chr6 (54-141)||(26049684-26049771)
chr6 (54-141)||(26070853-26070940)
chr6 (54-141)||(26085940-26086027)
chr6 (165-308)||(34278071-34278212)
chr6 (332-398)||(25550162-25550227)
chr6 (145-261)||(34274367-34274485)
chr6 (54-110)||(26065903-26065959)
chr6 (332-407)||(26051197-26051271)
chr6 (332-407)||(26072366-26072440)
chr6 (245-308)||(29151829-29151892)
[»] chr8 (1 HSPs)
chr8 (211-272)||(5709559-5709623)
[»] chr3 (1 HSPs)
chr3 (211-272)||(2885796-2885860)
[»] chr2 (1 HSPs)
chr2 (211-272)||(16186188-16186252)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 25549419 - 25549566
Alignment:
Q  136 atttatacgtaaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaacgagtaacat 235  Q
    |||| ||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| |||  |||||||||||||||||||||| ||    
T  25549419 atttctacgtaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagata--agtttgcgaataaaacgagtaagat 25549516  T
Q  236 tgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttga 285  Q
    | |||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  25549517 tcaaactaaaaatgcaaaagcaagatcaagtagtttattaatatacttga 25549566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 26087174 - 26087321
Alignment:
Q  136 atttatacgtaaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaacgagtaacat 235  Q
    |||| ||| ||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| ||||  ||||||||||||||||||||| ||    
T  26087174 atttctacttaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagatat--gtttgcgaataaaacgagtaagat 26087271  T
Q  236 tgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttga 285  Q
    | |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  26087272 tcaaactaaaaatgcaaaagcaagatcaagtagtttcttagtatacttga 26087321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26052485 - 26052573
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| ||||||| ||| |||||||||| | |  ||||||||||||||||||||||| ||||||||    
T  26052485 ttcctatttgaacttttaaaatagtcccacgtcgacccaaa-aagtagtaagatggtatttataaactttaatgtgtaccatacatgtta 26052573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26072538 - 26072626
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| ||||||| ||| |||||||||| | |  ||||||||||||||||||||||| ||||||||    
T  26072538 ttcctatttgaacttttaaaatagtcccacgtcgacccaaa-aagtagtaagatggtatttataaactttaatgtgtaccatacatgtta 26072626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 299
Target Start/End: Complemental strand, 33869770 - 33869603
Alignment:
Q  136 atttatacgtaaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaaccatata---taagtttgcgaataaaacgagt-a 231  Q
    |||| ||| |||| |||||| ||| | |||||||||||||||||| ||||||||||||||| ||||||| |||   ||||| |||||| | ||||||| |    
T  33869770 atttctacataaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaaccagataacttaagtatgcgaacagaacgagtaa 33869671  T
Q  232 acattgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttgaaaataaatgtgata 299  Q
    |||| |||| | |||||||||||||||||| ||||| ||| ||| | ||||||| || || |||||||    
T  33869670 acatggaaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgata 33869603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 29300554 - 29300410
Alignment:
Q  165 taaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaac--gagtaa-cattgaaactaaaaatgcaaaagcaagat 261  Q
    |||| |||||| ||||||| |||||||||||||||| ||| |||  ||||||  ||||||||  |||||| |||| ||| |||||||||||||||||| |    
T  29300554 taaaagcaaaatatcattcattttattgatatagaagccagata--agtttgaaaataaaacaagagtaaacattcaaaataaaaatgcaaaagcaagtt 29300457  T
Q  262 caagtattttcttattatacttgaaaataaatgtgatatcccaacaa 308  Q
    |||||| |||| || | ||||||| ||||| ||||||||||||||||    
T  29300456 caagtagtttcctagtttacttgacaataattgtgatatcccaacaa 29300410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 25490647 - 25490543
Alignment:
Q  208 ataagtttgcgaataaaacgag--taacattgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttgaaaataaatgtgatatcccaa 305  Q
    |||||||||| |||||||||||  ||||||| ||| ||||||||||||||||||||||||||  |||||| |||| |||| ||||| |||||||| ||||    
T  25490647 ataagtttgcaaataaaacgagagtaacattcaaattaaaaatgcaaaagcaagatcaagtagattcttagtataattgacaataattgtgatat-ccaa 25490549  T
Q  306 caacca 311  Q
    ||||||    
T  25490548 caacca 25490543  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 25516980 - 25517069
Alignment:
Q  52 ccttctgagagtgtgtgtt--cgttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 141  Q
    ||||||||||||||||||   ||| |||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||| |||||    
T  25516980 ccttctgagagtgtgtgtgtgcgtgcacacttgtcgcggaagatcaaattgataacagtaagcggcagaa--atatcttcataaacctttat 25517069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 25526556 - 25526641
Alignment:
Q  227 gagtaacattgaaactaaaaatgcaaaagcaa-gatcaagtattttcttattatacttgaaaataaatgtgatatcccaacaacca 311  Q
    |||| ||||| |||||||||||||||| |||| ||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||    
T  25526556 gagtgacattcaaactaaaaatgcaaatgcaaagatcaagtagtttcttagtatacttgacaataattgtgatatcccaacaacca 25526641  T

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Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 34257873 - 34257932
Alignment:
Q  145 taaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaacca 204  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  34257873 taaaactagagatcattcggtaaaggcaaaagatcaatctttttattgatatagaaacca 34257932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26051369 - 26051457
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26051369 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26051457  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26051555 - 26051643
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26051555 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26051643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26051741 - 26051829
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26051741 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26051829  T

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Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26051927 - 26052015
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26051927 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26052015  T

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Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26052113 - 26052201
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26052113 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26052201  T

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Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26052299 - 26052387
Alignment:
Q  318 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26052299 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26052387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 25490498 - 25490434
Alignment:
Q  331 ttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgta 395  Q
    |||||||||||||||| ||||||| |||||||||||||| ||| ||||||||| |||||||||||    
T  25490498 ttttaaaatagtcccacgtcgacccaaataagtagtaaggtagtgtttataaattttaatgtgta 25490434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 25525231 - 25525295
Alignment:
Q  75 cacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 141  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||    
T  25525231 cacacttgtcgcggaagatcaaatcgataaaagtaagcggcagaa--atatcttcataaacatttat 25525295  T

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Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 26047659 - 26047746
Alignment:
Q  54 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 141  Q
    |||||||||||||||| |  || | ||||||||| ||||||||||||||||||| |||| | ||||||  ||||||||||||||||||||    
T  26047659 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaagccgcagaa--atatcttcataaacatttat 26047746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 26049684 - 26049771
Alignment:
Q  54 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 141  Q
    |||||||||||||||| |  || | ||||||||| ||||||||||||||||||| |||| | ||||||  ||||||||||||||||||||    
T  26049684 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaagccgcagaa--atatcttcataaacatttat 26049771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 26070853 - 26070940
Alignment:
Q  54 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 141  Q
    |||||||||||||||| |  || | ||||||||| ||||||||||||||||||| |||| | ||||||  ||||||||||||||||||||    
T  26070853 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaagccgcagaa--atatcttcataaacatttat 26070940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 26085940 - 26086027
Alignment:
Q  54 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 141  Q
    |||||||||||||||| |  || | ||||||||| |||||||||||||||||||  ||| ||||||||  ||||||||||||||||||||    
T  26085940 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattataagcggcagaa--atatcttcataaacatttat 26086027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 34278071 - 34278212
Alignment:
Q  165 taaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagat 261  Q
    |||||||||| |||||||| ||| ||| |||||||| ||| |||  ||||||| |||||||||||    |||||| |||  |||||||||||||||||||    
T  34278071 taaaggcaaatgatcattcattt-attaatatagaagccaaata--agtttgcaaataaaacgagagtaaacattaaaa--aaaaatgcaaaagcaagat 34278165  T
Q  262 caagtattttcttattatacttgaaaataaatgtgatatcccaacaa 308  Q
    |||| | | || || | ||||||| ||||| ||||||||||||||||    
T  34278166 caagcagtgtcatagtttacttgacaataactgtgatatcccaacaa 34278212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 25550162 - 25550227
Alignment:
Q  332 tttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 398  Q
    ||||||||||||||| ||||||| ||| |||| | ||||||  ||||||||||||||||||||||||    
T  25550162 tttaaaatagtcccacgtcgacccaaa-aagtggcaagctattgtttataaactttaatgtgtacca 25550227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 34274367 - 34274485
Alignment:
Q  145 taaagctagagatcaatcggtaaaggcaaaagatcattcttttt-attgatatagaaaccatatataagtttgcgaataaaacg--agt-aacattgaaa 240  Q
    |||| |||||| ||| |||||||||| ||||||||| ||||||| | |||||||||||||  | | |||||||| ||||||| |  ||| |||||| |||    
T  34274367 taaaactagaggtcattcggtaaaggtaaaagatcaatcttttttactgatatagaaacc--acacaagtttgcaaataaaatgtaagtaaacattcaaa 34274464  T
Q  241 ctaaaaatgcaaaagcaagat 261  Q
     ||||||||||||||||||||    
T  34274465 ataaaaatgcaaaagcaagat 34274485  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 26065903 - 26065959
Alignment:
Q  54 ttctgagagtgtgtgttcgttcacacttgtcgcggaagatcaaattgataatagtaa 110  Q
    |||||||||||||||  ||| | ||||||||| ||||||||||||||||||| ||||    
T  26065903 ttctgagagtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaa 26065959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 26051197 - 26051271
Alignment:
Q  332 tttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26051197 tttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26051271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 26072366 - 26072440
Alignment:
Q  332 tttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtaccacacatgtta 407  Q
    ||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| |||||||||| | ||||||    
T  26072366 tttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtaccatatatgtta 26072440  T

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Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 29151829 - 29151892
Alignment:
Q  245 aaatgcaaaagcaagatcaagtattttcttattatacttgaaaataaatgtgatatcccaacaa 308  Q
    ||||||||||||||||||||  | | ||||| | ||||||| ||||| ||||||||||||||||    
T  29151829 aaatgcaaaagcaagatcaaccagtgtcttagtttacttgacaataattgtgatatcccaacaa 29151892  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 5709559 - 5709623
Alignment:
Q  211 agtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagatcaagtattttc 272  Q
    ||||||| |||||||||||    |||||| ||| |||||||||||||||||||||||||| ||||    
T  5709559 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 5709623  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 2885860 - 2885796
Alignment:
Q  211 agtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagatcaagtattttc 272  Q
    ||||||| |||||||||||    |||||| ||| |||||||||||||||||||||||||| ||||    
T  2885860 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 2885796  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 16186188 - 16186252
Alignment:
Q  211 agtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagatcaagtattttc 272  Q
    ||||||| |||||||||||    |||||| ||| |||||||||||||||||||||||||| ||||    
T  16186188 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 16186252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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