View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_high_5 (Length: 364)
Name: NF8170_high_5
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_high_5 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 55 - 364
Target Start/End: Original strand, 39891283 - 39891594
Alignment:
| Q |
55 |
agctcacatcgacgggaaggtttggcacctcgatgtcggctcttcgccacctggagctgtagtat--gttccaagggttgggctgttcgcccattaaaac |
152 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||||| |||||||| |
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| T |
39891283 |
agctcacatcgacgggaagttttggcacctcgatgtcggctcttcgccacctggagctgtagtatatgttttaagggttggaccgttcgtccattaaagt |
39891382 |
T |
|
| Q |
153 |
ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccgctataggcgtgtaagttatctcaatagcatttatcatcccatagagccca |
252 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39891383 |
ggtacgtgagctggattcagaacgtcgtgaggcagttcggtccatatccgctgtgggcgtgtaagttatctcaatagcatttatcatcccatagagccca |
39891482 |
T |
|
| Q |
253 |
gcttggaagatggaaatgatatgtaggttgactcgatagctaactaaatattacaaatttcaaacacaatgtgtttgttacatattaaaaatgaaaataa |
352 |
Q |
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||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39891483 |
gcttgaaagatggaaatgacatgtaggttgactcgaaagctaactaaatattacaaatttcaaacacaatgtgtttgttacatattaaaaatgataataa |
39891582 |
T |
|
| Q |
353 |
ttcaacaccaaa |
364 |
Q |
| |
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|||||||||||| |
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| T |
39891583 |
ttcaacaccaaa |
39891594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 182514 - 182313
Alignment:
| Q |
1 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182514 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
182415 |
T |
|
| Q |
101 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182414 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatc |
182315 |
T |
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| Q |
201 |
cg |
202 |
Q |
| |
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|| |
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| T |
182314 |
cg |
182313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 495003 - 495204
Alignment:
| Q |
1 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
495003 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
495102 |
T |
|
| Q |
101 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
495103 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatc |
495202 |
T |
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| Q |
201 |
cg |
202 |
Q |
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|| |
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| T |
495203 |
cg |
495204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 18192664 - 18192865
Alignment:
| Q |
1 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18192664 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
18192763 |
T |
|
| Q |
101 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatc |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18192764 |
ccacctggagctgtagtatattccaagggttgggctgttcgcccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatc |
18192863 |
T |
|
| Q |
201 |
cg |
202 |
Q |
| |
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|| |
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| T |
18192864 |
cg |
18192865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 27228826 - 27228626
Alignment:
| Q |
2 |
gtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcgc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27228826 |
gtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttgacacctcgatgtcggctcttcgc |
27228727 |
T |
|
| Q |
102 |
cacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatcc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228726 |
cacctggagctgtagtatgttccaagggttgggctgttcgcccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatcc |
27228627 |
T |
|
| Q |
202 |
g |
202 |
Q |
| |
|
| |
|
|
| T |
27228626 |
g |
27228626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3504964 - 3504763
Alignment:
| Q |
1 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3504964 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
3504865 |
T |
|
| Q |
101 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatc |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3504864 |
ccacctggagctgtagtatattccaagggttgggctgttcgcccattaaagcggtacgtgaactgggttcagaacgtcgtgagacagttcggtccatatc |
3504765 |
T |
|
| Q |
201 |
cg |
202 |
Q |
| |
|
|| |
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| T |
3504764 |
cg |
3504763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 34660005 - 34660203
Alignment:
| Q |
1 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34660005 |
cgtcgctcaacgaataaaagttactctagggataacaggctgatcttccccaagagctcatatcgacgggaaggtttggcacctcgatgtcggctcttcg |
34660104 |
T |
|
| Q |
101 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
34660105 |
ccacctggagctgtagtatgttccaagggttgggttgttcgcccattaaagcggtacgtgagctgggtacagaacgtcgtgagacagttcagtccatat |
34660203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 424921 - 424730
Alignment:
| Q |
1 |
cgtcgctcaacggataaaagttactctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctcgatgtcggctcttcg |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
424921 |
cgtcactcaacggataaaagttaccctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacctccatg----ctcttcg |
424826 |
T |
|
| Q |
101 |
ccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtcca |
196 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
424825 |
ccacctagagctgtagtatgttccaagggttgggctgttcgcccattaaagcggtgcgtgagctcggttcagaacgtcgtgagacagttcggtcca |
424730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 33226040 - 33226164
Alignment:
| Q |
75 |
tttggcacctcgatgtcggctcttcgccacctggagctgtagtatgttccaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaa |
174 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
33226040 |
tttggcacctcgacgtcggctctttgccacctagagttgtagtatgttccaagggttgggttgttcgcccattaaaacggtacgtgagctgggttcataa |
33226139 |
T |
|
| Q |
175 |
cgtcgtgagacagttcggtccatat |
199 |
Q |
| |
|
|||| |||||||||| |||||||| |
|
|
| T |
33226140 |
cgtcatgagacagtttagtccatat |
33226164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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