View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8170_low_11 (Length: 349)
Name: NF8170_low_11
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 5 - 338
Target Start/End: Complemental strand, 2324206 - 2323873
Alignment:
| Q |
5 |
cagactatagagaataatgaaggcataaagaaaaaatcatatataattacatttgcaacttatcttatgaagcatatatgtgtgctgtatatttaagata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2324206 |
cagactatagagaataatgaaggcataaagaaaaaatcatatataattacatttgcaacttatcttatgaagcatatatgtgtgctgtatatttaagata |
2324107 |
T |
|
| Q |
105 |
ataaaagtatatcgaatactaagaataggtttcactttgattggaacatgaatggttacattaattacctctgagctagaaatgcaaatattggagaagc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2324106 |
ataaaagtatatcgaatactaagaataggtttcactttgattggaacatgaatggttacattaattacctctgagctagaaatgcaaatattggagaagc |
2324007 |
T |
|
| Q |
205 |
cacaagaagtccacccataaaagcagatgataaaactccatctcaaaacttttgcatgttacactatcaatgttaaggcattgaacacgacatcaacagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2324006 |
cacaagaagtccacccataaaagcagatgataaaactccatctcaaaacttttgcatgttacactatcaatgttaaggcattgaacacaacatcaacagt |
2323907 |
T |
|
| Q |
305 |
tatcttgcatgtcacaaactaggtatttgatgtc |
338 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |
|
|
| T |
2323906 |
tatcttgcatgttacaaactaggtattttatgtc |
2323873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 2337220 - 2337029
Alignment:
| Q |
54 |
catttgcaacttatcttatgaagcatatatgtgtgctgtatatttaagataataaaagtatatcgaatactaagaataggtttcactttgattggaacat |
153 |
Q |
| |
|
|||||||||||||| ||||||||||| | | ||||||||||||||| |||||||| |||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
2337220 |
catttgcaacttatattatgaagcattca--tctgctgtatatttaagctaataaaactatatctaataataagaataggtttcatattgattggaacat |
2337123 |
T |
|
| Q |
154 |
gaatggttacattaattacctctgagctagaaatgcaaatattggagaagccacaagaagtccacccataaaagcagatgataaaactccatct |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2337122 |
gaatggttattctaattacctctgagctagagaggcaaatattggagaagccacgagaagtccaaccataaaagcagatgacaaaactccatct |
2337029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 2344412 - 2344279
Alignment:
| Q |
114 |
tatcgaatactaagaataggtttcactttgattggaacatgaatggttacattaattacctctgagctagaaatgcaaatattggagaagccacaagaag |
213 |
Q |
| |
|
|||| |||| || |||||||||||| |||||| |||| |||||| || ||||||||||| ||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
2344412 |
tatctaatagtatgaataggtttcaaactgattgcaacacgaatggctatcctaattacctcttagctagagacgcaaatattggagaagccatgagaag |
2344313 |
T |
|
| Q |
214 |
tccacccataaaagcagatgataaaactccatct |
247 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||| |
|
|
| T |
2344312 |
tccaaccataaaatcagatgataaaacaccatct |
2344279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 36799328 - 36799389
Alignment:
| Q |
186 |
atgcaaatattggagaagccacaagaagtccacccataaaagcagatgataaaactccatct |
247 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
36799328 |
atgcaaatattggagaagctataagaagtccaaccataaaagcagatgaaagaactccatct |
36799389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University