View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_low_12 (Length: 347)
Name: NF8170_low_12
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 72 - 298
Target Start/End: Original strand, 14691386 - 14691610
Alignment:
| Q |
72 |
aagaaatcgaagatttaattaacattaaggaattaccatttgaataggaataaaaaatttagtaacaaattcggaaaatggactcgtgttaatttccaat |
171 |
Q |
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| T |
14691386 |
aagaaatcgatgatttaattaatagtatggaattaccatttgaataggaataaaaaatttagtaacaaaatcggaagatgaactcgtgttaatttccaat |
14691485 |
T |
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| Q |
172 |
caatttatataaggttgaaatcaattaccattcctatactagagaagcaggagttttcatactgaagcattcttacattaatactagagggcagattgta |
271 |
Q |
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| T |
14691486 |
--atttatataaggttgaaatcaattaccattcctatactagagaagaacgagttttcatactgaagcatgtttacattaattctagaggacagattgta |
14691583 |
T |
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| Q |
272 |
gaccaattgtgccatgaatcatgctta |
298 |
Q |
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| T |
14691584 |
gaccaattgtgtcatgaatcatactta |
14691610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 40 - 294
Target Start/End: Original strand, 14683979 - 14684227
Alignment:
| Q |
40 |
ttcttaatacttgatcttatttatggtcacctaagaaatcgaagatttaattaacattaaggaattaccatttgaataggaataaaaaatttagtaacaa |
139 |
Q |
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| T |
14683979 |
ttcttaatggttgttcttatttaaggttacctaagaaatcaatgatttaattaatattaaggaattactatttcaataggaattgaaaattcaataacca |
14684078 |
T |
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| Q |
140 |
attcggaaaatggactcgtgttaatttccaatcaatttatataaggttgaaatcaattaccattcctatactagagaagcaggagttttcatactgaagc |
239 |
Q |
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| T |
14684079 |
atttggaagatgaaatcacattaatttccaatcaatttatgtaaggttgaaatcaataaccattcctatcctag------aggagttttcatactcaagc |
14684172 |
T |
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| Q |
240 |
attcttacattaatactagagggcagattgtagaccaattgtgccatgaatcatg |
294 |
Q |
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| T |
14684173 |
attcatacatttaccctagaggacagattgtagaccaattgtgtcatgagtcatg |
14684227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 14691660 - 14691696
Alignment:
| Q |
297 |
tatgagaatggttatttaaagtttaattagagaagag |
333 |
Q |
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| T |
14691660 |
tatgataatggttatttaaaggttaattagagaagag |
14691696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 2438459 - 2438605
Alignment:
| Q |
133 |
gtaacaaattcggaaaatggactcgtgttaatttccaatcaatttatataaggttgaaatcaattaccattcctatactagagaagcaggagttttcata |
232 |
Q |
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| T |
2438459 |
gtaacaaactcagaatatgaactcatgttaatttccaatcaatttgcataaggttgaaatcaataaccactcctagattagaaaagcacgagttttcata |
2438558 |
T |
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| Q |
233 |
ctgaagcattcttacattaatactagagggcagattgtagaccaatt |
279 |
Q |
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| T |
2438559 |
ctccagcatccatacatcaaccctagaacacaaattgtagaccaatt |
2438605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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