View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8170_low_18 (Length: 240)
Name: NF8170_low_18
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_18 |
 | |
|
| [»] scaffold0051 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0051 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34518 - 34740
Alignment:
| Q |
1 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaacattctcccccttaatgtgttgttcttgaactccaagagcttctcttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34518 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaacattataccccttaatgtgttgttcttgaactccaagagattctcttaat |
34617 |
T |
|
| Q |
101 |
ttctggattttttctctaggaagagcttttgtgaaaatatcagcaacttgatcatttgccttgcaaaaactcagttgcacctcctcatcttcaattgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34618 |
ttctggattttttctctaggaagagcttttgtgaaaatatcagcaacttgatcatttgtcttgcaaaaactcagctgcacctcctcatcttcaattgctt |
34717 |
T |
|
| Q |
201 |
ctcgaatgaaatgatgtctgatg |
223 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
34718 |
ctcgaataaaatgatgtttgatg |
34740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 22945 - 23166
Alignment:
| Q |
2 |
taggtacatttttccaatacaagcatttatgatacaacacattactcaacattctcccccttaatgtgttgttcttgaactccaagagcttctcttaatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22945 |
taggtacatttttccaatacaagcatttatgatacagcacattactcaacattatcccccttaatgtgttgttcttgaactccaagagcttctcttaatt |
23044 |
T |
|
| Q |
102 |
tctggattttttctctaggaagagcttttgtgaaaatatcagcaacttgatcatttgccttgcaaaaactcagttgcacctcctcatcttcaattgcttc |
201 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23045 |
tctgaattttttctctagaaagagcttttgtgaaaatatcagcaacttgatcatttgtcttgcaaaaactcagctgcacctcctcatcttcaattgcttc |
23144 |
T |
|
| Q |
202 |
tcgaatgaaatgatgtctgatg |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
23145 |
tcgaatgaaatgatgtttgatg |
23166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 38894 - 38939
Alignment:
| Q |
7 |
acatttttccaatacaagcatttatgatacaacacattactcaaca |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38894 |
acatttttccaatacaagcatttatgatacagcacattactcaaca |
38939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17532032 - 17532255
Alignment:
| Q |
1 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaacattctcccccttaatgtgttgttcttgaactccaagagcttctcttaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17532032 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaacattctcccccttaatgtgttgttcttgaactccaagagcttctcataat |
17532131 |
T |
|
| Q |
101 |
ttctggattttttctctaggaagagcttttgtgaaaatatcagcaacttgatcatttgccttgcaaaaactcagttgcac-ctcctcatcttcaattgct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| | | ||||||||||||||| |
|
|
| T |
17532132 |
ttctggattttttctctaggaagagcttttgtgaaaatattagcaacttgatcatttgtcttgcaaaatgatgtttgatggcacatcatcttcaattgct |
17532231 |
T |
|
| Q |
200 |
tctcgaatgaaatgatgtctgatg |
223 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
17532232 |
tctcgaatgaaatgatgtttgatg |
17532255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17536454 - 17536505
Alignment:
| Q |
1 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaaca |
52 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
17536454 |
ctaggtacattttttcaatacaaacatttatgatacagcacattactcaaca |
17536505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16418380 - 16418432
Alignment:
| Q |
1 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaacat |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16418380 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaacat |
16418432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 553097 - 553148
Alignment:
| Q |
1 |
ctaggtacatttttccaatacaagcatttatgatacaacacattactcaaca |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
553097 |
ctaggtacatttttccaatacaagcatttatgatacagcacattactcaaca |
553148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 26617488 - 26617440
Alignment:
| Q |
5 |
gtacatttttccaatacaagcatttatgatacaacacattactcaacat |
53 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26617488 |
gtacatttttccaatacaagcatttatggtacagcacattactcaacat |
26617440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 26723416 - 26723368
Alignment:
| Q |
5 |
gtacatttttccaatacaagcatttatgatacaacacattactcaacat |
53 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26723416 |
gtacatttttccaatacaagcatttatggtacagcacattactcaacat |
26723368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University