View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_low_19 (Length: 240)
Name: NF8170_low_19
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 44236480 - 44236703
Alignment:
| Q |
17 |
acttttaactcttaactcttttaatttcttagggtgtctttgtttcaaagttaccacgaacattcttgagaaagtgaggttaagaatataacattatagt |
116 |
Q |
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| T |
44236480 |
acttttaactcttagctcttttaatttcttagggtgtctttgtttgaaagttatcacgaacattcttgagaaagtgaggttaggaatataacattatcgt |
44236579 |
T |
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| Q |
117 |
gtttgatacaagttnnnnnnnntcttttttcaacggtattcttaaaactagtgttaactcgtaaactcgaacgaattcacgttttcaggtgtgaatttag |
216 |
Q |
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| T |
44236580 |
gtttgatacaagtttaaaaaaatcttttttcaacggtattcttaaaactaatgttaactcgtaaactcgaacgaattcacgttttcagatgtgaatttag |
44236679 |
T |
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| Q |
217 |
tgttaattcgatgggaaactcatt |
240 |
Q |
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| T |
44236680 |
tgttaattcgatggcaaactcatt |
44236703 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 11153473 - 11153432
Alignment:
| Q |
166 |
agtgttaactcgtaaactcgaacgaattcacgttttcaggtg |
207 |
Q |
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| T |
11153473 |
agtgttaactcgtaaactcggacgaatttacgtttttaggtg |
11153432 |
T |
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