View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_low_2 (Length: 601)
Name: NF8170_low_2
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 7494970 - 7494365
Alignment:
| Q |
1 |
taaccttaagttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcagatgaggtaaatct |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7494970 |
taaccttaagttcatcttcatgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctctttgtcagatgaggtaaatct |
7494871 |
T |
|
| Q |
101 |
tacccccactagtgcaccgannnnnnngaaa-caagatacttaaattaatcaactaacataataagccaagacaacaagaatctgtccaactaaataaga |
199 |
Q |
| |
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||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7494870 |
tacccccactagtgccccgattttttttaaaacaagatacttaaattaatcaactaacataataagccaagacaacaagaatctgtccaactaagtaaga |
7494771 |
T |
|
| Q |
200 |
aaaagcaacaaatagacaaattatactcactctttcagactgtgtcaaaagaagagttttgggatcgatgaataatagtcggttttgtgctggttcaact |
299 |
Q |
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|
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
7494770 |
aaaagcaataaatagacaaattacactcactctttcagtctgtgtcaaaagaagagttttgggatcaatgaataatagtcggttttgtgctggttcaatt |
7494671 |
T |
|
| Q |
300 |
gccaaggattgtatgaaa-----gctttatgggatatttgttataacgata-----------------cagtgcctttcgataaagctccttaaaaattg |
377 |
Q |
| |
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||||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
7494670 |
gccaaggattgtatgtaatggaagctgtatgggatatttgttataaggataataacgatacagacatacagtgcctttcgataaagctccttaaaaattg |
7494571 |
T |
|
| Q |
378 |
tcgggttttaactgtcttacagtgtagcaaaccatgttttggttttttggctactgttgttttgtttccattc--tttggcttgatagcttttaaggtgg |
475 |
Q |
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| T |
7494570 |
tcgggttttaactgtcttacggtgtagcaagaattgttttggttttctggctaccg-----ttgtttccattctttttggcttgatagcttttaaggtga |
7494476 |
T |
|
| Q |
476 |
ccacaaacgtaattcaaattgaagaag-aaaaaacatgatgacttattttcttatggaaacttcttttcttctcattgtttccattctattcgcagggac |
574 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7494475 |
ccacaaatgtaattcaaattgaagaagaaaaaaacatgatgacttattttcttatggaaacttcttttcttctcattgtttccattctattcgcagggac |
7494376 |
T |
|
| Q |
575 |
aggatcgtatt |
585 |
Q |
| |
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|||||||||| |
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| T |
7494375 |
tggatcgtatt |
7494365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 7491776 - 7491704
Alignment:
| Q |
302 |
caaggattgtatgaaagctttatgggatatttgttataacgatacagtgcctttcgataaagctccttaaaaa |
374 |
Q |
| |
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| T |
7491776 |
caaggattctatggaagctgtatggaatatttgttacaatgatacagcgcctttcgataaagctccttgaaaa |
7491704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 439 - 501
Target Start/End: Complemental strand, 7491667 - 7491605
Alignment:
| Q |
439 |
ttgtttccattctttggcttgatagcttttaaggtggccacaaacgtaattcaaattgaagaa |
501 |
Q |
| |
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| T |
7491667 |
ttgtttccattctttggcttgatactttttaaggtgatcacaaatgtaattcaaattcaagaa |
7491605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 19152028 - 19151934
Alignment:
| Q |
284 |
ttgtgctggttcaactgccaaggattgtatgaaagctttatgggatatttgttataacgatacagtgcctttcgataaagctccttaaaaattgt |
378 |
Q |
| |
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|||| ||| |||||||||||||||| |||| ||||| ||||||| | ||||||||||||||||| |||||| |||| ||||||||||| ||||| |
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| T |
19152028 |
ttgttctgcttcaactgccaaggatgctatggaagctgtatgggaaacttgttataacgatacagcgccttttgatagagctccttaaagattgt |
19151934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 19158204 - 19158120
Alignment:
| Q |
281 |
gttttgtgctggttcaactgccaaggattgtatgaaagctttatgggatatttgttataacgatacagtgcctttcgataaagct |
365 |
Q |
| |
|
||||||| ||||||||||||| ||| || |||| ||||| ||||||| | ||||||||| ||||||| |||||| |||| |||| |
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| T |
19158204 |
gttttgttctggttcaactgcgaagaatgctatggaagctgtatgggaaacttgttataatgatacagcgccttttgatagagct |
19158120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 19158076 - 19158021
Alignment:
| Q |
439 |
ttgtttccattctttggcttgatagcttttaaggtggccacaaacgtaattcaaat |
494 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| || ||| ||||||||||| |
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| T |
19158076 |
ttgtttccattctttggcttgataccatttaaggtgatcataaatgtaattcaaat |
19158021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 53325407 - 53325484
Alignment:
| Q |
11 |
ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga |
88 |
Q |
| |
|
||||||| | |||||||||||| |||| ||||| | ||| | ||| ||||||||||||||| |||||||||| |||| |
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| T |
53325407 |
ttcatctgcttgaacaatatttgcttctaaatttttatcactattttcatttatgtgatcaacctcctcttggacaga |
53325484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 14122451 - 14122374
Alignment:
| Q |
11 |
ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga |
88 |
Q |
| |
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| T |
14122451 |
ttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttaggtgatcaacctcctcttggacaga |
14122374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 35048776 - 35048700
Alignment:
| Q |
12 |
tcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga |
88 |
Q |
| |
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|||||| | |||||||||||| |||| ||||| ||||| | || ||||||||||||||| |||||||||| |||| |
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| T |
35048776 |
tcatctgcttgaacaatatttgcttctaaattttcatcactgttttcatttatgtgatcaacctcctcttggacaga |
35048700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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