View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8170_low_23 (Length: 218)
Name: NF8170_low_23
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 5174604 - 5174650
Alignment:
| Q |
26 |
agataagatatgttgctgttaataattggagcaagtagacaataata |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174604 |
agataagatatgttgctgttaataattggagcaagtagacaataata |
5174650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 5174657 - 5174717
Alignment:
| Q |
162 |
catatgtaaaatgaacatttatctaact----catgcatgttgcgtatgagaaaaaatact |
218 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5174657 |
catatttaaaatgaacatttatctaactcatgcatgcatgttgcgtatgagaaaaaatact |
5174717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University