View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_low_24 (Length: 202)
Name: NF8170_low_24
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 32365274 - 32365453
Alignment:
| Q |
1 |
cataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataat |
100 |
Q |
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| T |
32365274 |
cataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataat |
32365373 |
T |
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| Q |
101 |
gatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctccttgttgatctttaga |
180 |
Q |
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| T |
32365374 |
gatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctccttgttgatctttaga |
32365453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 32376959 - 32377138
Alignment:
| Q |
1 |
cataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataat |
100 |
Q |
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| T |
32376959 |
cataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataat |
32377058 |
T |
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| Q |
101 |
gatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctccttgttgatctttaga |
180 |
Q |
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| T |
32377059 |
gatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctccttgttgatctttaga |
32377138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 36121908 - 36122044
Alignment:
| Q |
17 |
tgaacatacatgttcccaaaaccaagtctctccatgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaa |
116 |
Q |
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|||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||| | ||||||||||| | ||||| | || | ||| | ||||| |
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| T |
36121908 |
tgaacatacatgtttccaaagccaagtctctccatattccaaccaaatgcacaaaaagtacagaaaagtgataaatatgcttgagagatatcgtcccaaa |
36122007 |
T |
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| Q |
117 |
tgtcaagtattcctccactccatttcggtctattttc |
153 |
Q |
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| T |
36122008 |
tgtcaagtattccaccactccactttggtctattttc |
36122044 |
T |
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