View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8170_low_4 (Length: 522)
Name: NF8170_low_4
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 71 - 509
Target Start/End: Complemental strand, 23485616 - 23485173
Alignment:
| Q |
71 |
ttattaatttattcggacacatgcagtcgaacttattaaacatttatttgtgttttaaatttggttggtgttccttnnnnnnnnn--cccattaacactt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23485616 |
ttattaatttattcggacacatgcagtcgaacttattaaacatttatttgtgttttaaatttggttggtgttccttaaaaaaaaaatcccattaacactt |
23485517 |
T |
|
| Q |
169 |
tgatattttacactactactcctttacaaatta----ctctctgtaaacgtttactctttctaacgttaaatattatttgatctacgtgtatgcattcac |
264 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23485516 |
tgatattttacactactcctcctttacaaattaattactctctgtaaacgtttactctttctaacgttaaatattatttgatctacgtgtatgcattcac |
23485417 |
T |
|
| Q |
265 |
caccaagtaactgaattgtaactttagaatgaaaaagaaatgaccatatatagtagtactagttggtgtcggttctttatttctttgttggctgttttta |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23485416 |
caccaagtaactgaattgtaactttagaatgaaaaagaaatgaccatatatagtagtactagttggtgtcggttctttatttctttgttggctgttttta |
23485317 |
T |
|
| Q |
365 |
tatctgttgcaggagtctgcagtgagtggtcctctaccatgttaaattcaatcagacggcacgaatgggtgataagagtttgcaatcatcctcccctcag |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23485316 |
tatctgttgcaggagtctgcagtgagtggtcctctaccatgttaaattcaatcagacggcacgaatgggtgataagagtttgcaatcatcctcccctcag |
23485217 |
T |
|
| Q |
465 |
taactaaagtacacacttccatttttcttcttttattcacctttc |
509 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
23485216 |
taact-aagtacacacttccatttttcttgttttatacacctttc |
23485173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 34129169 - 34129137
Alignment:
| Q |
105 |
attaaacatttatttgtgttttaaatttggttg |
137 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
34129169 |
attaaacatttatttttgttttaaatttggttg |
34129137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University