View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_low_5 (Length: 493)
Name: NF8170_low_5
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 222 - 484
Target Start/End: Complemental strand, 32853686 - 32853424
Alignment:
| Q |
222 |
agggaattaatttttctgcagaagatgatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctg |
321 |
Q |
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| T |
32853686 |
agggaattaatttttctgcagaagatgatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctg |
32853587 |
T |
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| Q |
322 |
cagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaa |
421 |
Q |
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| T |
32853586 |
cagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaa |
32853487 |
T |
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| Q |
422 |
ggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
484 |
Q |
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| T |
32853486 |
ggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
32853424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 222 - 484
Target Start/End: Complemental strand, 37176822 - 37176560
Alignment:
| Q |
222 |
agggaattaatttttctgcagaagatgatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctg |
321 |
Q |
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| T |
37176822 |
agggaattaatttttctgcaaaagatgatgcaaataagttattctctactatgattaatgataaaaaatctggtgagatgtggtttttagatagtggttg |
37176723 |
T |
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| Q |
322 |
cagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaa |
421 |
Q |
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| T |
37176722 |
tagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaa |
37176623 |
T |
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| Q |
422 |
ggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
484 |
Q |
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| T |
37176622 |
ggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
37176560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 37177033 - 37176851
Alignment:
| Q |
11 |
catccttccaacagaggtcatggaaggcattatggatacaaaggaagaggaggagaaaggatacgaggtaattctaattcttattgctttatttgcaaaa |
110 |
Q |
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| T |
37177033 |
catccttccaacataggtcatggaaggcattatggatacaaaggaagaggaggagaaaggatacgaggtaattctaattcttattgctttatttgcaaaa |
37176934 |
T |
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| Q |
111 |
aatctggacatgaatcaaaagattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
193 |
Q |
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| T |
37176933 |
aatctggacatgaatcaaaagattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
37176851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 32853898 - 32853715
Alignment:
| Q |
11 |
catccttccaacagaggtcatggaaggcattatggatacaaaggaagaggaggagaaaggatacgaggtaattctaattcttattgcttta-tttgcaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32853898 |
catccttccaacagaggtcatggaaggcattatggatacaaaggaagaggaggagaaaggatacgaggtaattctaattcttattgctttattttgcaaa |
32853799 |
T |
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| Q |
110 |
aaatctggacatgaatcaaaagattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
193 |
Q |
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| T |
32853798 |
aaatctggacatgaatcaaaagattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
32853715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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