View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8170_low_6 (Length: 470)
Name: NF8170_low_6
Description: NF8170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8170_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 31837543 - 31837098
Alignment:
| Q |
18 |
atcacttcgtgaactacgtttgcaaatatatttattttaagttcaaaattaagtgatgttacatgcgtatatcagcagcatgttataaaagagattaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837543 |
atcacttcgtgaactacgtttgcaaatatatttattttaagttcaaaattaagtgatgttacatgcgtatatcagcagcatgttataaaagagattaata |
31837444 |
T |
|
| Q |
118 |
ttaannnnnnnncagaggagattaatactattaaaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaa---tttacaa |
214 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31837443 |
ttaattttttt-cagaggagattaatactattacaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaa |
31837345 |
T |
|
| Q |
215 |
caatgtaaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggt |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31837344 |
caatataaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtataccaggt |
31837245 |
T |
|
| Q |
315 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837244 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31837145 |
T |
|
| Q |
415 |
ccaacacaagactctctcagaaattgctcttccttaatttttctctg |
461 |
Q |
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| T |
31837144 |
ccaacacaagactctctcagaaattgctcttccttaatttttctctg |
31837098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 130 - 449
Target Start/End: Complemental strand, 31841465 - 31841150
Alignment:
| Q |
130 |
cagaggagattaatactattaaaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaa---tttacaacaatgtaaacat |
226 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
31841465 |
cagaggagattaatattattaaaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacat |
31841366 |
T |
|
| Q |
227 |
gagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggttcaagaatcggg |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
31841365 |
gagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaat----accaggttcaagaatcggg |
31841270 |
T |
|
| Q |
327 |
tgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattgccaacacaagac |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31841269 |
tgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg---acacaagac |
31841173 |
T |
|
| Q |
427 |
tctctcagaaattgctcttcctt |
449 |
Q |
| |
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||| ||||||||||||||||||| |
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|
| T |
31841172 |
tctatcagaaattgctcttcctt |
31841150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 31841592 - 31841518
Alignment:
| Q |
32 |
tacgtttgcaaatatatttattttaagttcaaaattaagtgatgttacatgcgtatatcagcagcatgttataaaaga |
109 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||| ||||| |||||| |||||||||||||||| |
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| T |
31841592 |
tacgtttgcaaatatatgtaaattaagttcaaaattaagtgatgtt-tatgcg--tatcagtagcatgttataaaaga |
31841518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 104 - 283
Target Start/End: Complemental strand, 38041073 - 38040895
Alignment:
| Q |
104 |
aaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtgga |
203 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
38041073 |
aaaagagattaatattaattttttttcataggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagtacaagaagtata |
38040974 |
T |
|
| Q |
204 |
agaatttacaacaatgtaaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatca |
283 |
Q |
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||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
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| T |
38040973 |
agagtttacaacaatataaacatgaactacaaccaaatgctagc-taattaaaacacagaccaacagagaaagtttatca |
38040895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 315 - 461
Target Start/End: Complemental strand, 38040897 - 38040751
Alignment:
| Q |
315 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
38040897 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
38040798 |
T |
|
| Q |
415 |
ccaacacaagactctctcagaaattgctcttccttaatttttctctg |
461 |
Q |
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||| |||||| ||||||||| ||| |||||||||||||||| |||| |
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| T |
38040797 |
acaagacaagattctctcagagattcctcttccttaatttttttctg |
38040751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 38041191 - 38041126
Alignment:
| Q |
21 |
acttcgtgaactacgtttgcaaatatatttattttaagttcaaaattaagtgatgttacatgcgtat |
87 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
38041191 |
acttcgtgaactacgtttgcaaacatatgtattttaagttc-aaattaagtgatgttatatgcgtat |
38041126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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