View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8171_high_6 (Length: 210)

Name: NF8171_high_6
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8171_high_6
NF8171_high_6
[»] chr6 (16 HSPs)
chr6 (16-184)||(2986505-2986673)
chr6 (19-198)||(2927880-2928066)
chr6 (19-179)||(2965292-2965457)
chr6 (19-181)||(2983626-2983798)
chr6 (90-183)||(3002900-3002993)
chr6 (90-183)||(2952802-2952895)
chr6 (101-183)||(2954945-2955027)
chr6 (90-183)||(2974851-2974944)
chr6 (94-192)||(2935457-2935558)
chr6 (19-99)||(2938205-2938284)
chr6 (19-86)||(2930071-2930138)
chr6 (19-128)||(2658147-2658260)
chr6 (19-86)||(2954841-2954911)
chr6 (19-85)||(2935362-2935429)
chr6 (19-85)||(2952710-2952778)
chr6 (19-52)||(2996658-2996691)
[»] chr7 (1 HSPs)
chr7 (101-183)||(3339859-3339941)
[»] scaffold0024 (3 HSPs)
scaffold0024 (104-183)||(34180-34259)
scaffold0024 (19-86)||(43599-43669)
scaffold0024 (111-183)||(43484-43556)
[»] chr3 (1 HSPs)
chr3 (24-88)||(49614205-49614269)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 2986505 - 2986673
Alignment:
Q  16 acattgtttgtttcaatggtttcattattttgtgtgttttgttagatcgaaattgtaatttcatataaataaatcaacttgatcctgttgtattgttgtt 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2986505 acattgtttgtttcaatggtttcattagtttgtgtgttttgttagatcgaaattgtaatttcatataaataaatcaacttgatcatgttgtattgttgtt 2986604  T
Q  116 gaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtt 184  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  2986605 gaacaaaatgggtctgatagtgtggttggcaaaatctaggggtgcaactagaaactcctaactaatgtt 2986673  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 2927880 - 2928066
Alignment:
Q  19 ttgtttgtttcaatggtttcattat--tttgtgtgttttgt---tagatcgaaattgtaatttcatataaataaatcaacttgatcctgttgtattgttg 113  Q
    ||||||||| |||||||||||||||  |||||||||| |||   ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  2927880 ttgtttgttccaatggtttcattatcttttgtgtgttgtgtacttagattgaaattataatttcatataaataaatcaacttgatcatgttgtattgttg 2927979  T
Q  114 ttgaacaaaatgggtctaatagtgtggttggc--aaaatctaggggtgcaggtagaaactcctaactaatgttacgtctcgtgtgtg 198  Q
    ||||||||||||||||| |||| |||||||||  ||||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  2927980 ttgaacaaaatgggtctgatagcgtggttggcaaaaaatcttggggtgcaggtagaaactcctgactaatgtcacgtctcgtgtgtg 2928066  T

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Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 2965292 - 2965457
Alignment:
Q  19 ttgtttgtttcaatggtttcattat--tttgtgtgttttgt---tagatcgaaattgtaatttcatataaataaatcaacttgatcctgttgtattgttg 113  Q
    |||||||||||||||||||||||||  |||||||||| |||   ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  2965292 ttgtttgtttcaatggtttcattatcttttgtgtgttgtgtccttagattgaaattgtaatttcatataaataaagcaacttgatcatgttgtattgttg 2965391  T
Q  114 ttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaacta 179  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  2965392 ttgaacaaaattggtctgatagtgttgttggcaaaatctagggtttcaggtagaaactcctaacta 2965457  T

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Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 2983626 - 2983798
Alignment:
Q  19 ttgtttgtttcaatggtttcattatttt--gtgtgttttgt---tagatcgaaattgtaatttcatataaataaatcaacttgatcctgttgtattgttg 113  Q
    ||||||||||||||||||||||||| ||  ||||||| |||   ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  2983626 ttgtttgtttcaatggtttcattatatttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataaagcaacttgatcatgttgtattgttg 2983725  T
Q  114 ttgaacaaaatgggtct--aat---agtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaat 181  Q
    || |||||||| |||||  |||   ||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  2983726 ttaaacaaaattggtctgaaattaaagtgttgttcgcaaaatctaggggtgcaggtaaaaactcctaactaat 2983798  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 3002993 - 3002900
Alignment:
Q  90 caacttgatcctgttgtattgttgttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 183  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  3002993 caacttgatcatgttgtattgttgttgaacaaaatgggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaacttcaaactaatgt 3002900  T

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Target: chr6; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 2952802 - 2952895
Alignment:
Q  90 caacttgatcctgttgtattgttgttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 183  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  2952802 caacttgatcatgttgtattgttgttgaacaaaattggtctgatagtgttgttggcaaaatctaggggtgcaggtagaaattcctaactaatgt 2952895  T

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Target: chr6; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 2954945 - 2955027
Alignment:
Q  101 tgttgtattgttgttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 183  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2954945 tgttttattgttgttgaacaaaatgggtctgatagtgtggttggcaaaatctagggttgcaggtagaaactcctaactaatgt 2955027  T

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Target: chr6; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 2974851 - 2974944
Alignment:
Q  90 caacttgatcctgttgtattgttgttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 183  Q
    |||||||||| |||||||||||||||||||||||| || || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  2974851 caacttgatcatgttgtattgttgttgaacaaaattggcctgatagtgttgttggaaaaatctaggggtgcaggtagaaactcctaactaatgt 2974944  T

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Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 2935457 - 2935558
Alignment:
Q  94 ttgatcctgttgtattgttgttgaacaaaatgggtctaatagt---gtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgttacgtct 190  Q
    |||||| |||||||||||||||||||||||| ||||| |||||   || ||||||||||||||||||||||||||||||||| |||||||||| | ||||    
T  2935457 ttgatcatgttgtattgttgttgaacaaaattggtctgatagtactgttgttggcaaaatctaggggtgcaggtagaaactcataactaatgtcatgtct 2935556  T
Q  191 cg 192  Q
    ||    
T  2935557 cg 2935558  T

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Target: chr6; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 2938205 - 2938284
Alignment:
Q  19 ttgtttgtttcaatggtttcattattttgtgtgttttgttagatcgaaattgtaatttcatataaataaatcaacttgatc 99  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||    
T  2938205 ttgtttgtttcaatg-tttcattattttgtgtgttgtgttagatcgaaaatgtaatttgatataaataaaacaacttgatc 2938284  T

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Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2930071 - 2930138
Alignment:
Q  19 ttgtttgtttcaatggtttcattattttgtgtgttttgttagatcgaaattgtaatttcatataaata 86  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  2930071 ttgtttgtttcaatggtttcattattttgtgtgttgtattagatcaaaattgtaatttcatataaata 2930138  T

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Target: chr6; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 2658260 - 2658147
Alignment:
Q  19 ttgtttgtttcaatggtttcattat--tttgtgtgttttgt---tagatcgaaattgtaatttcatataaataaatcaacttgatcctgttgtattgttg 113  Q
    ||||||||||||||| |||||||||  |||||||||| |||   || || ||||||||||||||||||||||||| |||||||||| |||| ||||||||    
T  2658260 ttgtttgtttcaatg-tttcattatcttttgtgtgttgtgtacttatattgaaattgtaatttcatataaataaagcaacttgatcatgttctattgttg 2658162  T
Q  114 ttgaacaaaatgggt 128  Q
    ||| |||||||||||    
T  2658161 ttgcacaaaatgggt 2658147  T

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Target: chr6; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2954841 - 2954911
Alignment:
Q  19 ttgtttgtttcaatggtttcattattttgtgtgttttg---ttagatcgaaattgtaatttcatataaata 86  Q
    ||||||||||| ||||||||||||||||||||||| ||   ||||||||| ||||||||||||||||||||    
T  2954841 ttgtttgtttctatggtttcattattttgtgtgttgtgtacttagatcgatattgtaatttcatataaata 2954911  T

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Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 2935362 - 2935429
Alignment:
Q  19 ttgtttgtttcaatggtttcattat-tttgtgtgttttgttagatcgaaattgtaatttcatataaat 85  Q
    ||||||||||||||||||||||||| ||| ||||||   |||||| ||||||||||||||||||||||    
T  2935362 ttgtttgtttcaatggtttcattatctttttgtgttgcattagattgaaattgtaatttcatataaat 2935429  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 2952710 - 2952778
Alignment:
Q  19 ttgtttgtttcaatggtttcattattttgtgtgttttg--ttagatcgaaattgtaatttcatataaat 85  Q
    |||||||||||||||||||||||| | | | ||| |||  |||||| ||||||||||||||||||||||    
T  2952710 ttgtttgtttcaatggtttcattaatctctttgtgttgcattagattgaaattgtaatttcatataaat 2952778  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 2996691 - 2996658
Alignment:
Q  19 ttgtttgtttcaatggtttcattattttgtgtgt 52  Q
    ||||||||||||||||||||||||||||| ||||    
T  2996691 ttgtttgtttcaatggtttcattattttgggtgt 2996658  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 3339859 - 3339941
Alignment:
Q  101 tgttgtattgttgttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 183  Q
    ||||||| |||| ||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  3339859 tgttgtactgtttttgaacaaaatgggtctgataatatggttggcaaaatctaggggtgcatgtagaaactcctaactaatgt 3339941  T

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Target: scaffold0024 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 34259 - 34180
Alignment:
Q  104 tgtattgttgttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 183  Q
    |||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||||||| |||||||||||||| ||||||    
T  34259 tgtaatgttgttgaacaaaattggtctgatagtgttgttggcaaaatctacgggtgcaagtagaaactcctaagtaatgt 34180  T

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Target: scaffold0024; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 43669 - 43599
Alignment:
Q  19 ttgtttgtttcaatggtttcattattttgtgtgttttg---ttagatcgaaattgtaatttcatataaata 86  Q
    ||||||||||||||||||||||||||||||||||| ||   |||||| |||||||||||||||||||||||    
T  43669 ttgtttgtttcaatggtttcattattttgtgtgttgtgtaattagattgaaattgtaatttcatataaata 43599  T

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Target: scaffold0024; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 43556 - 43484
Alignment:
Q  111 ttgttgaacaaaatgggtctaatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 183  Q
    ||||||||||||||| || |  ||||||| |||||||||| |||||||||| |||||||||| ||||||||||    
T  43556 ttgttgaacaaaatgtgtatgttagtgtgattggcaaaatataggggtgcatgtagaaactcttaactaatgt 43484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 49614205 - 49614269
Alignment:
Q  24 tgtttcaatggtttcattattttgtgtgttttgttagatcgaaattgtaatttcatataaataaa 88  Q
    ||||||||||||||||||||||||  |||| |  ||||| ||||||| || ||||||||||||||    
T  49614205 tgtttcaatggtttcattattttgcatgttgtactagattgaaattgcaacttcatataaataaa 49614269  T

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