View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8171_low_1 (Length: 570)
Name: NF8171_low_1
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8171_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 144 - 562
Target Start/End: Original strand, 36440075 - 36440487
Alignment:
| Q |
144 |
ctgatggagacaacaccggaagtgttgtacaaaggagtatctctgtttgcaacccaaacaatggtttgttctgaaattttgttgtaccatataccaaggt |
243 |
Q |
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| T |
36440075 |
ctgatggagacaacaccggaagtgttgtacaaaggagtatctctgtttgcaacccaaacaatggtttgttctgaaattttgttgtaccatataccaaggt |
36440174 |
T |
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| Q |
244 |
atcgtgttttagaatctttctgtagggtgaagaaaccaagtgcaaaggttcctcgagggttggagaccaaaacatcgttgtcttccaatgattggttcag |
343 |
Q |
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| T |
36440175 |
atcgtgttttagaatctttctgtaaggtgaagaaaccaagtgcaaaggttcctcgagggttggagaccaaaacatcgttgtcttccaatgattggttcag |
36440274 |
T |
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| Q |
344 |
tgttatggtgtcaagtgagtggcaagaagggtagtaaagaatcaacagcnnnnnnnnnnnnnnnnnnggaacctctttcatggtgttatgaatagcattt |
443 |
Q |
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| T |
36440275 |
tgttatggtgtcaagtgagtggcaagaagggtagtaaagaatcaacagc------agaagaagaagaggaacctctttcatggtgttatgaatagcattt |
36440368 |
T |
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| Q |
444 |
gatgagtgaaaaggattagaaatgaacaagttgaatttgagttacttttatcattaatgatgagaatgcgtgctgatctggggatgaatatgcatgagtt |
543 |
Q |
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| T |
36440369 |
gatgagtgaaaaggattagaaatgaacaagttgaatttgagttacttttatcattaatgatgagaatgcgtgctgatctggggatgaatatgcatgagtt |
36440468 |
T |
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| Q |
544 |
gttatatacgggccctgtg |
562 |
Q |
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| T |
36440469 |
gttatatatgggtcctgtg |
36440487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 36439949 - 36440016
Alignment:
| Q |
18 |
ccattgtctaaaagcttagctgaaacattgccaaatgaaggtgaaacagaaacattggaagaccaaat |
85 |
Q |
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| T |
36439949 |
ccattgtctaaaagcttagctgaaacattgccaaatgaaggtgaaacagaaacattggaagaccaaat |
36440016 |
T |
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