View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8171_low_11 (Length: 211)
Name: NF8171_low_11
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8171_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27041852 - 27041659
Alignment:
| Q |
1 |
attgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041852 |
attgcaaaagacttggtgcttgatattccttctcctaaggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattg |
27041753 |
T |
|
| Q |
101 |
gaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041752 |
gaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatc |
27041659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27086330 - 27086137
Alignment:
| Q |
1 |
attgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27086330 |
attgcaaaagacttggtgcttgatattccttctcctaaggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattg |
27086231 |
T |
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| Q |
101 |
gaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
27086230 |
gaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttgcaagaggaagaactgagccatc |
27086137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 27070274 - 27070079
Alignment:
| Q |
1 |
attgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattg |
100 |
Q |
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||||||||| | |||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
27070274 |
attgcaaaacatttggtgcttgattttcctactcctcaggataaaaattaccctttggtgttaatggtgacaaaatttctctgtggtggtttcacaattg |
27070175 |
T |
|
| Q |
101 |
gaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatctg |
196 |
Q |
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|||||||| |||| ||||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||| ||| ||||||||||||||||||| |
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| T |
27070174 |
gaatggggatgtcacatgctatttgtgacggatttggtgcatcacaattcttcaaagcagttgttgaacttgcaagaggaagaactgagccatctg |
27070079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27063201 - 27063008
Alignment:
| Q |
1 |
attgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattg |
100 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
27063201 |
attgcaaaacatttggtgcttgatcttccttctcctcaagataaaaattaccctttggtgttaatggtgacgaaatttctttgtggtggtttcacaattg |
27063102 |
T |
|
| Q |
101 |
gaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatc |
194 |
Q |
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|
|||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||| |||||||| |||||||| |
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| T |
27063101 |
gaatggggatgtcacatgctatttgtgacggatttggcgcatcacaattcttcaaagcaattcttgaacttgcaagaggaagaaccgagccatc |
27063008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 27046271 - 27046076
Alignment:
| Q |
1 |
attgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| || ||||||||||||||| ||||||| ||||||||||||| |
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| T |
27046271 |
attgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcacaattg |
27046172 |
T |
|
| Q |
101 |
gaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatctg |
196 |
Q |
| |
|
||||||||| || |||| | ||||||| |||| ||| || ||| |||||| ||||||| ||||||||| || ||||||| |||||| |||| |
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| T |
27046171 |
gaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtcttcaaagcaattattgaacttgtaaaaggaagaagtgagccttctg |
27046076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 27098949 - 27098806
Alignment:
| Q |
48 |
ttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaa |
147 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||| |||||||| || ||||||||| ||| ||| ||||| ||||||||| |||| ||||| ||| |
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| T |
27098949 |
ttaccctttggtgttcaaggtgacaaaatttctttgtggaggtttcacgatcggaatgggggtgttgcacgctatctgtgacggagttggtgcatctcaa |
27098850 |
T |
|
| Q |
148 |
atcttcagagcaattgttgaacttggaagtggaagaactgagcc |
191 |
Q |
| |
|
|||||| ||| || ||||||||| ||| ||||||| |||||| |
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| T |
27098849 |
ttcttcaaagcgatcattgaacttgcaaggggaagaaatgagcc |
27098806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 27105953 - 27105805
Alignment:
| Q |
43 |
aaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctatttgtgacggatttggcgcat |
142 |
Q |
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|||| ||||||||||||||| | |||||||||||||| |||||| ||||||||||| ||||||||| || ||| ||||| ||||||||| |||| |||| |
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| T |
27105953 |
aaaacttaccctttggtgttcaaggtgacaaaatttcgttgtggaggtttcacaatcggaatgggggtgctgcacgctatctgtgacggagttggtgcat |
27105854 |
T |
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| Q |
143 |
cacaaatcttcagagcaattgttgaacttggaagtggaagaactgagcc |
191 |
Q |
| |
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| ||| | |||| ||| ||| ||||||||| ||| ||||||| |||||| |
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| T |
27105853 |
ctcaattattcaaagcgattattgaacttgcaagaggaagaaatgagcc |
27105805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 19414958 - 19414814
Alignment:
| Q |
47 |
gttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctatttgtgacggatttggcgcatcaca |
146 |
Q |
| |
|
||||||| |||||| ||||||| ||| ||||| ||||||| || | || ||||||||||||||||| ||||| ||||||| |||||||| ||||| || |
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| T |
19414958 |
gttacccattggtggtaatggtaacacaatttatttgtggtggcataaccattggaatggggttgtcacatgccgtttgtgatggatttggtgcatctca |
19414859 |
T |
|
| Q |
147 |
aatcttcagagcaattgttgaacttggaagtggaagaactgagcc |
191 |
Q |
| |
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| | |||| |||||||||||| ||| || ||||||| |||||| |
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| T |
19414858 |
atttttcaatgcaattgttgaaattgcaaaaggaagaaatgagcc |
19414814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 20065076 - 20064949
Alignment:
| Q |
52 |
cctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatct |
151 |
Q |
| |
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|||||||| || | ||||||||| ||||||||||| |||||||||||||||||||| ||||| ||| | ||||||| || | ||| ||||| ||| ||| |
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| T |
20065076 |
cctttggttttcaaggtgacaaagtttctttgtggtggtttcacaattggaatgggattgtcacatagtgtttgtgatggttatggtgcatctcaattct |
20064977 |
T |
|
| Q |
152 |
tcagagcaattgttgaacttggaagtgg |
179 |
Q |
| |
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|||||| ||| |||||||| |||||| |
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|
| T |
20064976 |
atagagcacttgctgaacttgcaagtgg |
20064949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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