View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8171_low_2 (Length: 544)
Name: NF8171_low_2
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8171_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 48466447 - 48465936
Alignment:
| Q |
19 |
tcagtatcatagaaatgtggaaactgtagaaagaaaggactattagacctactgttttccaaggtttaattctcgagcactgaaaatgcccgggactcgt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
48466447 |
tcagtatcatagaaatgtggaaactgtagaaagaaaggactattagacctactgttttccaaggtttaattctcgagcactgaaatt-cccgggactcgt |
48466349 |
T |
|
| Q |
119 |
ttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgagcgctagcagcatacagggatgcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48466348 |
ttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgagcgctagcagcatacagggatgcca |
48466249 |
T |
|
| Q |
219 |
taagcaggtaactaggacctgtaatctggagggattgaagatacctaaatattttctccttatctacaatgttatccaacatgtgcatcatagatcacac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48466248 |
taagcaggtaactaggacctgtaatctggagggtttgaagatacctaaatattttctccttatctacaatgttatccaacatgtgcatcatagatcacac |
48466149 |
T |
|
| Q |
319 |
aactgagaaatatcacttaagttactgcaaacattagtaagtgtagttatgaaaatagctgctgc-nnnnnnnncccttctgcttctagttccttgatag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
48466148 |
aactgagaaatatcacttaagttactgcaaacattagtaagtgtagttatgaaaattgctgctgcttttttttttccttctgcttctagttccttgatag |
48466049 |
T |
|
| Q |
418 |
tattcaataccgatttttgttttgcaggtatttaaagcagttttaacaataggcccttggggacaaaagaggttgtcaagttccggaatgctggacaaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48466048 |
tattcaataccgatttttgttttgcaggtatttaaagcagttttaacaataggcccttggggacaaaagaggttgtcaagttccggaatgctggacaaat |
48465949 |
T |
|
| Q |
518 |
catgagcatattg |
530 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48465948 |
catgagcatattg |
48465936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 129 - 313
Target Start/End: Complemental strand, 25585278 - 25585094
Alignment:
| Q |
129 |
actttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgagcgctagcagcatacagggatgccataagcaggta |
228 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| | | || |||||||||| |||||| || ||||||| |||||||||| ||| ||||| |
|
|
| T |
25585278 |
actttgcttcatttgctaattcaatcgcttggttgaatacagtatcagggctttcactaagttgagctctggcagcatctagggatgccaaaagaaggta |
25585179 |
T |
|
| Q |
229 |
actaggacctgtaatctggagggattgaagatacctaaatattttctccttatctacaatgttatccaacatgtgcatcatagat |
313 |
Q |
| |
|
|||||||| ||| | ||||| | ||| ||| ||||| ||||||| |||||||||||||||| | | ||||||||| ||||||| |
|
|
| T |
25585178 |
actaggacttgtgctttggagagtttggagacacctagatattttttccttatctacaatgtcacctgacatgtgcagcatagat |
25585094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 110 - 312
Target Start/End: Complemental strand, 25590180 - 25589978
Alignment:
| Q |
110 |
gggactcgtttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgagcgctagcagcataca |
209 |
Q |
| |
|
|||| |||||| | ||| ||||||||||||||| ||||||| |||||||| || |||||| | || |||||||||| |||||| |||||||||| | |
|
|
| T |
25590180 |
gggattcgttttagcaaaaactttgcttcatttgctaattcaatcgcttgtttaaatacaatagcagggctttcactaagttgagctctagcagcatcta |
25590081 |
T |
|
| Q |
210 |
gggatgccataagcaggtaactaggacctgtaatctggagggattgaagatacctaaatattttctccttatctacaatgttatccaacatgtgcatcat |
309 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| | || || | ||| ||| ||||| ||||||| |||||||||||||||| || ||||||||| ||| |
|
|
| T |
25590080 |
gggatgccaaaagaaggtaactaggacttgtgctttgcagtgtttggagacacctagatattttttccttatctacaatgtcgcccgacatgtgcagcat |
25589981 |
T |
|
| Q |
310 |
aga |
312 |
Q |
| |
|
||| |
|
|
| T |
25589980 |
aga |
25589978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 110 - 312
Target Start/End: Complemental strand, 25599832 - 25599630
Alignment:
| Q |
110 |
gggactcgtttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgagcgctagcagcataca |
209 |
Q |
| |
|
|||| |||||| | ||| ||||||||||||||| ||||||| |||||||| || |||||| | || |||||||||| |||||| |||||||||| | |
|
|
| T |
25599832 |
gggattcgttttagcaaaaactttgcttcatttgctaattcaatcgcttgtttaaatacaatagcagggctttcactaagttgagctctagcagcatcta |
25599733 |
T |
|
| Q |
210 |
gggatgccataagcaggtaactaggacctgtaatctggagggattgaagatacctaaatattttctccttatctacaatgttatccaacatgtgcatcat |
309 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| | || || | ||| ||| ||||| ||||||| |||||||||||||||| || ||||||||| ||| |
|
|
| T |
25599732 |
gggatgccaaaagaaggtaactaggacttgtgctttgcagtgtttggagacacctagatattttttccttatctacaatgtcgcccgacatgtgcagcat |
25599633 |
T |
|
| Q |
310 |
aga |
312 |
Q |
| |
|
||| |
|
|
| T |
25599632 |
aga |
25599630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 469 - 528
Target Start/End: Complemental strand, 25589118 - 25589059
Alignment:
| Q |
469 |
ggcccttggggacaaaagaggttgtcaagttccggaatgctggacaaatcatgagcatat |
528 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
25589118 |
ggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatat |
25589059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 469 - 528
Target Start/End: Complemental strand, 25598770 - 25598711
Alignment:
| Q |
469 |
ggcccttggggacaaaagaggttgtcaagttccggaatgctggacaaatcatgagcatat |
528 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
25598770 |
ggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatat |
25598711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 42077218 - 42076895
Alignment:
| Q |
21 |
agtatcatagaaatgtggaaactgtagaaagaaaggactattagacctactgttttccaaggtttaattctcgagcactgaaaatgcccgggactcgttt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| | || |||||| |
|
|
| T |
42077218 |
agtatcatagaaatgtggaaactgtagaaagaaaggactattagacctattgttttccaaggtttaattctcaagcactgaga-tgccagagattcgttt |
42077120 |
T |
|
| Q |
121 |
aatcaagaactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgagcgctagcagcatacagggatgccata |
220 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||| |
|
|
| T |
42077119 |
aagcaagcactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaagttgagctctagcagtatccagggatgccata |
42077020 |
T |
|
| Q |
221 |
agcaggtaactaggacctgtaatctggagggattgaagatacctaaatattttctccttatctacaatgttatccaacatgtgcatcatagatcacacaa |
320 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
42077019 |
agcaggtaactaggacctgtagtctcgagggtttgaaaatacctaaatattttctccttatctacaatgttatccaacaagtgcatcatagaagacacaa |
42076920 |
T |
|
| Q |
321 |
ctgagaaatatcacttaagttactg |
345 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42076919 |
ctgagaaatatcacttaagttactg |
42076895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 393 - 528
Target Start/End: Complemental strand, 42076863 - 42076727
Alignment:
| Q |
393 |
ccttctgcttctagttccttgatagtattcaataccgatttttgttttgcaggtatttaaagcagttttaacaataggcccttg-gggacaaaagaggtt |
491 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
42076863 |
ccttctgcttcttgttcctggatagtattcaataccgatttttgttttgcagatatttaaagcagttttaacaataggcccttgaaaaaaaaaagaggtt |
42076764 |
T |
|
| Q |
492 |
gtcaagttccggaatgctggacaaatcatgagcatat |
528 |
Q |
| |
|
| |||||||| ||||| || ||||||||||||||||| |
|
|
| T |
42076763 |
gacaagttccagaatgttgtacaaatcatgagcatat |
42076727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University