View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8171_low_6 (Length: 241)
Name: NF8171_low_6
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8171_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 52582962 - 52583190
Alignment:
| Q |
13 |
gacatcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaa |
112 |
Q |
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| T |
52582962 |
gacatcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaa |
52583061 |
T |
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| Q |
113 |
agagccaagcacgaagaattgctacagatgattcaggtaaccctctaatagggctccaaacttatcgtaggttttgaatgactccaagtagttggagaga |
212 |
Q |
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| T |
52583062 |
agagccaagcacgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagaga |
52583161 |
T |
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| Q |
213 |
cactatagtctgtctattattatctctct |
241 |
Q |
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| T |
52583162 |
cattctagtctgtctattattatctctct |
52583190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 52591061 - 52591105
Alignment:
| Q |
89 |
cttacggatgaagaaagtgctcaaagagccaagcacgaagaattg |
133 |
Q |
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| T |
52591061 |
cttacggattaagaaaatgttcaaagagccaagcacgaagtattg |
52591105 |
T |
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