View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8171_low_7 (Length: 237)
Name: NF8171_low_7
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8171_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8167967 - 8167746
Alignment:
| Q |
1 |
ttagtgttttcccttgagaagaaacttttgcagccaaaaagcagagtacttgggatatcttttcaaattgttaacgaaatcgacataaattattccaaat |
100 |
Q |
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| T |
8167967 |
ttagtgttttcccttgagaaggaacttttgcagccaaaaagcagagtacttgggatatctcttcaaattgttaacgaaatcgacataaattattccaaat |
8167868 |
T |
|
| Q |
101 |
cgtactgtgtaccctgcatcccattcatagctgtcggaaaatgaccatgcatagtaccccttcacatttgcaccatctctgcaagaaaaaggaccaaaaa |
200 |
Q |
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| T |
8167867 |
cgtactgtgtaccctgcatcccattcatagctgtcggaaaatgaccatgcatagtaccccttcacatttgcaccatctctgcaagaaaaaggaccaaaaa |
8167768 |
T |
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| Q |
201 |
gttaccataatcaattctttat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8167767 |
gttaccataatcaattctttat |
8167746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8143145 - 8142955
Alignment:
| Q |
1 |
ttagtgttttcccttgagaagaaacttttgcagccaaaaagcagagtacttgggatatcttttcaaattgttaacgaaatcgacataaattattccaaat |
100 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
8143145 |
ttagtgttttcccttgagaaggaacttttgcagccaaaaagcagagtacttgggatatctcttcaatttgttaacgaaatccacataaattattccaaat |
8143046 |
T |
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| Q |
101 |
cgtactgtgtaccctgcatcccattcatagctgtcggaaaatgaccatgcatagtaccccttcacatttgcaccatctctgcaagaaaaag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
8143045 |
cgtactgtgtaccctgcatcccattcatagctgtcggaaaatgaccatgcatagtaccccttcacatttgcaccatgtctacaagaaaaag |
8142955 |
T |
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