View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8171_low_8 (Length: 236)

Name: NF8171_low_8
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8171_low_8
NF8171_low_8
[»] chr3 (12 HSPs)
chr3 (18-236)||(36313822-36314040)
chr3 (56-221)||(36321266-36321437)
chr3 (42-223)||(36333923-36334110)
chr3 (63-223)||(36309763-36309928)
chr3 (55-223)||(36328097-36328271)
chr3 (56-191)||(30201120-30201258)
chr3 (57-107)||(36336651-36336701)
chr3 (61-159)||(30227327-30227428)
chr3 (51-98)||(30223140-30223187)
chr3 (52-85)||(36326202-36326235)
chr3 (198-227)||(36336845-36336874)
chr3 (57-137)||(30214723-30214803)
[»] chr1 (1 HSPs)
chr1 (57-191)||(16955661-16955798)
[»] chr5 (1 HSPs)
chr5 (138-223)||(16053663-16053751)
[»] chr7 (2 HSPs)
chr7 (51-136)||(16644731-16644816)
chr7 (51-136)||(17619092-17619177)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 36313822 - 36314040
Alignment:
Q  18 aaaacgtaggtaggataaatcagagatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacat 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36313822 aaaacgtaggtaggataaatcacagatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacat 36313921  T
Q  118 gcactcgtcacaatttcaataccaagcctctgaagaatgttttctgtcaaatcatttggaagatcaagccaattcggtcctgtgctctcactttcctctt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  36313922 gcactcgtcacaatttcaataccaagcctctgaagaatgttttctgtcaaatcacttggaagatcaagccaatttggtcgtgtgctctcactttcctctt 36314021  T
Q  218 ccattgctggtggtcctgt 236  Q
    |||||||||||||||||||    
T  36314022 ccattgctggtggtcctgt 36314040  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 56 - 221
Target Start/End: Original strand, 36321266 - 36321437
Alignment:
Q  56 gaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa---taccaagcctctgaag 152  Q
    ||||| ||| ||||||||| |||||||||||||| ||||||||||| | |||||| || || |||||||||||||||||||   ||||||||||||||||    
T  36321266 gaataatgcaccacatgagtggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaag 36321365  T
Q  153 aatgttttctgtcaaatcatttggaagatcaagccaattcggtcc---tgtgctctcactttcctcttccat 221  Q
     |||||||||||||||||| ||||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  36321366 gatgttttctgtcaaatcacttggaagatcaagccaatttggtcctgttgtgctctcactttcctcttccat 36321437  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 36333923 - 36334110
Alignment:
Q  42 gatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa---ta 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |  || || || || ||||||||||||||||| |   ||    
T  36333923 gatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccattgtggacacactcggcaagcactcgtcacaatttccaacgta 36334022  T
Q  139 ccaagcctctgaagaatgttttctgtcaaatcatttggaagatcaagccaattcggtcc---tgtgctctcactttcctcttccattg 223  Q
    |||||||||||||| |||||| ||||||||||| | | ||| ||| |||||| ||| ||   |||||||| ||||||||||| |||||    
T  36334023 ccaagcctctgaaggatgtttgctgtcaaatcactcgtaaggtcaggccaatacggacctgttgtgctctaactttcctctttcattg 36334110  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 36309763 - 36309928
Alignment:
Q  63 gcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaat---accaagcctctgaagaatgttt 159  Q
    ||||||||| ||||||||||||||||| ||| ||||||| |  || || || ||||||||||||||||||||||    ||||||||| ||||| ||||||    
T  36309763 gcgccacattagaggatccttgcaaatgttccaccattgcggacacactcg-catgcactcgtcacaatttcaaacgcaccaagcctatgaaggatgttt 36309861  T
Q  160 tctgtcaaatcatttggaagatcaagccaattcgg---tcctgtgctctcactttcctcttccattg 223  Q
     ||||||||||  | ||||||||||||||||||||   || |||||| || |||||| |||||||||    
T  36309862 gctgtcaaatctataggaagatcaagccaattcggccctcttgtgctttccctttccacttccattg 36309928  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 36328097 - 36328271
Alignment:
Q  55 cgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa---taccaagcctctgaa 151  Q
    |||||||| |||||||||| ||||||||||||||  ||| ||||||| | | | || || ||||||||| ||| ||||||||   |||||||||||||||    
T  36328097 cgaatagttcgccacatgacaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaa 36328196  T
Q  152 gaatgttttctgtcaaatcatttggaagatcaagccaattcggtcctg---tgctctcactttcctcttccattg 223  Q
    | |||||| ||||||||||| | |||||||||| |||||| ||  |||   | || |||||||||||||||||||    
T  36328197 ggatgtttgctgtcaaatcaatcggaagatcaaaccaatttggcactgttattctgtcactttcctcttccattg 36328271  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 30201258 - 30201120
Alignment:
Q  56 gaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa---taccaagcctctgaag 152  Q
    |||| ||| ||||||||||||||||||||||||| ||| ||||| |||  || ||  |||||||||| |||||||||||||   ||| |||||| |||||    
T  30201258 gaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaag 30201159  T
Q  153 aatgttttctgtcaaatcatttggaagatcaagccaatt 191  Q
    |||||||||||| |  || || ||||| |||||||||||    
T  30201158 aatgttttctgtaatgtctttaggaagttcaagccaatt 30201120  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 36336651 - 36336701
Alignment:
Q  57 aatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgca 107  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  36336651 aatagtgcgccacgtgagaggattcttgcaaatcttcaaccattgagtgca 36336701  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 30227428 - 30227327
Alignment:
Q  61 gtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa---taccaagcctctgaagaatgt 157  Q
    ||||||||||||||||||||||||||||| ||| || || |||  || ||  |||||||||| |||||||| || |   |||||||||| ||||||||||    
T  30227428 gtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgt 30227329  T
Q  158 tt 159  Q
    ||    
T  30227328 tt 30227327  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 30223187 - 30223140
Alignment:
Q  51 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaacca 98  Q
    |||| |||| ||||||||||||||||||||||||||||| ||| ||||    
T  30223187 catgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 36326202 - 36326235
Alignment:
Q  52 atgcgaatagtgcgccacatgagaggatccttgc 85  Q
    ||||||||||||| ||||||||||||||||||||    
T  36326202 atgcgaatagtgcaccacatgagaggatccttgc 36326235  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 36336845 - 36336874
Alignment:
Q  198 tgtgctctcactttcctcttccattgctgg 227  Q
    ||||||||||||||||||||||||||||||    
T  36336845 tgtgctctcactttcctcttccattgctgg 36336874  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 30214803 - 30214723
Alignment:
Q  57 aatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaat 137  Q
    ||||||| |||| || ||||||||||||||||| ||| ||||| |||  || ||  |||||||||| |||||||| |||||    
T  30214803 aatagtgtgccatataagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatctcaat 30214723  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 16955661 - 16955798
Alignment:
Q  57 aatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa---taccaagcctctgaaga 153  Q
    ||||||||||||||||||||||||||||||||| ||| |||||  || ||| ||  ||||| |||| || ||||||||||   || |||||||||| |||    
T  16955661 aatagtgcgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggaga 16955760  T
Q  154 atgttttctgtcaaatcatttggaagatcaagccaatt 191  Q
    ||||||  || |||||| ||||| || |||||||||||    
T  16955761 atgtttattgccaaatcttttggtagttcaagccaatt 16955798  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 16053663 - 16053751
Alignment:
Q  138 accaagcctctgaagaatgttttctgtcaaatcatttggaagatcaagccaattcggtc---ctgtgctctcactttcctcttccattg 223  Q
    ||||||||||||||| || |||  |||||||||  | ||||||||||||||||| ||||   ||||||||||||||||  |||||||||    
T  16053663 accaagcctctgaaggatatttgatgtcaaatctctaggaagatcaagccaatttggtcctgctgtgctctcactttcaacttccattg 16053751  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 16644731 - 16644816
Alignment:
Q  51 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa 136  Q
    |||| |||| ||||||||||||||||| ||||||||||| ||| ||||| |||  || ||  |  ||||||| |||||||||||||    
T  16644731 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaa 16644816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 17619092 - 17619177
Alignment:
Q  51 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgcactcgtcacaatttcaa 136  Q
    |||| |||| ||||||||||||||||| ||||||||||| ||| ||||| |||  || ||  |  ||||||| |||||||||||||    
T  17619092 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaa 17619177  T

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