View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8171_low_9 (Length: 235)
Name: NF8171_low_9
Description: NF8171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8171_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 33033689 - 33033890
Alignment:
| Q |
19 |
tatgtttcttattttattgatagttttgtattataggtgatgaacttaggctccagtctccctagaaaccaatcatattcaagtaaggtcgtatccgatg |
118 |
Q |
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| T |
33033689 |
tatgtttcttattttattgatagttttgtattataggtgatgaacttaggctccagtctccctagaaaccaatcatattcaagtaaggtcgtatccgatg |
33033788 |
T |
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| Q |
119 |
tcctctctggtatataaatttttgttaaatcttaaactctcaatgcaggactgactcggttgatgtctacactggttctatagatgaagtaataactttc |
218 |
Q |
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| T |
33033789 |
tcctctctggtatataaatttttgttaaatcttaaactctcaatgcaggactgactcggttgatgtctacactggttctatagatgaagtaataactttc |
33033888 |
T |
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| Q |
219 |
tt |
220 |
Q |
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|| |
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| T |
33033889 |
tt |
33033890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 33033233 - 33033312
Alignment:
| Q |
28 |
tattttattgatagttttgtattataggtgatgaacttaggctccagtctccctagaaaccaatcatattcaagtaaggt |
107 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||| | |||||| ||||| |
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| T |
33033233 |
tattttgttgatagttttgtactataggtgatgaacttaggttcctgtctccctagaaaccgatcctgttcaagcaaggt |
33033312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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