View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_16 (Length: 398)
Name: NF8172_high_16
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 36233158 - 36233536
Alignment:
| Q |
15 |
aaatatatatggttacaaatttggtttggtgtgcttaaaaggcaaggttgtaaaggacaaatcaacactccagctatattttgatttgaaagtaatatat |
114 |
Q |
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| T |
36233158 |
aaatatatttggttacaaatttggtttggtgtgcttaaaaggcaaggttgtaaaggacaaatcaacactccagctatattttgatttggaagtaatatat |
36233257 |
T |
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| Q |
115 |
agaaaataatgtcacattgtataaaagaagaaatatgttcaatgctagtggttgaattgaacctctatagttttcgaggatttcaagaataatggttata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
36233258 |
agaaaataatgtcacattgtataaaagaagaaatatgttcaatgctagtggttgaattgaacctctcttgttttcgaggatttcaagaataatggttata |
36233357 |
T |
|
| Q |
215 |
tatatttttgttgtacgacaaacttaggtctacttgctcacgtgtgaattcttaaatgtgtttgactttttaaatcaactttgtgattctattggcgtgt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36233358 |
tatatttttgttgtacgacaaacttaggtctacttgctcacgtgtgagttcttaaatgtgtttgactttttaaatcaactttgtgattctattggcgtgt |
36233457 |
T |
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| Q |
315 |
gcatgtggttcttgcttattattgaggacatgtaaataaaattggaagtcccattttaaacttatatatatttctaact |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36233458 |
gcatgtggttcttgcttattattgaggacatgtaaataaaattggaagtcccattttaaacttatatatatttctaact |
36233536 |
T |
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