View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_18 (Length: 381)
Name: NF8172_high_18
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 14665761 - 14666111
Alignment:
| Q |
20 |
acaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaaatgggggttaggtttcaactttcaaccaatgttattgtagtgattta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14665761 |
acaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaactgggggttaggtttcaactttcaatcaatgttattgtagtgattta |
14665860 |
T |
|
| Q |
120 |
ctacaatcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaannnnnnn-actatacactatatgt |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
14665861 |
ctacaatcaatatattctataaaaggaacaaatatagcaatgcatgaagctcctaagtatacaccttttgttctaattttttttactatacactatatgt |
14665960 |
T |
|
| Q |
219 |
caggaatcacttgcctcgttcaatcccatcgattattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgaca |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14665961 |
caggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgaca |
14666060 |
T |
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| Q |
319 |
ttgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14666061 |
ttgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
14666111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 125 - 353
Target Start/End: Complemental strand, 14673121 - 14672893
Alignment:
| Q |
125 |
atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaannnnnnnactatacactatatgtcaggaa |
224 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
14673121 |
atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa |
14673022 |
T |
|
| Q |
225 |
tcacttgcctcgttcaatcccatcgattattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacattgaat |
324 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| || | |||| | ||||||||||||| |||||| ||||||| |
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| T |
14673021 |
tcacttgcctcgttcaatcccattgataattatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaat |
14672922 |
T |
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| Q |
325 |
tagaacattccaaccttcaaataatagcc |
353 |
Q |
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| T |
14672921 |
tcgaacattcaaatcttcaaataatagcc |
14672893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 125 - 353
Target Start/End: Complemental strand, 14678499 - 14678271
Alignment:
| Q |
125 |
atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaannnnnnnactatacactatatgtcaggaa |
224 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
14678499 |
atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa |
14678400 |
T |
|
| Q |
225 |
tcacttgcctcgttcaatcccatcgattattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacattgaat |
324 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| || | |||| | ||||||||||||| |||||| ||||||| |
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| T |
14678399 |
tcacttgcctcgttcaatcccattgataattatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaat |
14678300 |
T |
|
| Q |
325 |
tagaacattccaaccttcaaataatagcc |
353 |
Q |
| |
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| |||||||| || ||||||||||||||| |
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| T |
14678299 |
tcgaacattcaaatcttcaaataatagcc |
14678271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 144 - 359
Target Start/End: Complemental strand, 14687781 - 14687566
Alignment:
| Q |
144 |
ggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaannnnnnnactatacactatatgtcaggaatcacttgcctcgttcaatc |
243 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||| | ||| ||||||||| ||||||| ||||||| |
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| T |
14687781 |
ggaacaaatatggcaatgcatcaagttcctaagtatacaccttttgttctaattcttttactatactccgcatgccaggaatcatttgcctcattcaatc |
14687682 |
T |
|
| Q |
244 |
ccatcgattattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacattgaattagaacattccaaccttca |
343 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| |||| || | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14687681 |
ccatcgataattatttggtcacttgtggttcatcttataatatcacatttcagggtcgaactttcatacctgacattgaattcgaacattccaaccttca |
14687582 |
T |
|
| Q |
344 |
aataatagcctttcac |
359 |
Q |
| |
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|||||||||||||||| |
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| T |
14687581 |
aataatagcctttcac |
14687566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 14687827 - 14687785
Alignment:
| Q |
30 |
ttcaaacaaaatctttatagcaagagcttcagtagctaataaa |
72 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
14687827 |
ttcaaacaaaatctatatagaaagagcttcggtagctaataaa |
14687785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 30735399 - 30735049
Alignment:
| Q |
20 |
acaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaaatgggggttaggtttcaactttcaaccaatgttattgtagtgattta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30735399 |
acaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataatctggtggttaggtttcaactttcaatcaatgttattgtagtgattta |
30735300 |
T |
|
| Q |
120 |
ctacaatcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaannnnnnn-actatacactatatgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
30735299 |
ctacaatcaatatattctataaaaggaacaaatattgcaatgcatgaagctcctaagtatacaccttttgttctaattttttttactatacactatatgt |
30735200 |
T |
|
| Q |
219 |
caggaatcacttgcctcgttcaatcccatcgattattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgaca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30735199 |
caggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgaca |
30735100 |
T |
|
| Q |
319 |
ttgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30735099 |
ttgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
30735049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 348
Target Start/End: Original strand, 24057093 - 24057226
Alignment:
| Q |
215 |
atgtcaggaatcacttgcctcgttcaatcccatcgattattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacct |
314 |
Q |
| |
|
||||| ||||||| | ||||||||| ||||||| ||| |||||||||||||||||||||| || || || | | ||| |||||||||||||| ||||| |
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| T |
24057093 |
atgtcgggaatcattcgcctcgttccatcccattgataattatttggtcgcttgtggttcttcccacaatgtcacgtttcagggtcgaactttcgtacct |
24057192 |
T |
|
| Q |
315 |
gacattgaattagaacattccaaccttcaaataa |
348 |
Q |
| |
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|||| |||||| |||||||||||| ||||||||| |
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|
| T |
24057193 |
gacactgaatttgaacattccaactttcaaataa |
24057226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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