View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_19 (Length: 377)
Name: NF8172_high_19
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 56189317 - 56188971
Alignment:
| Q |
19 |
atagttaagatacttgtaaaaaatgctaagtaatgagaaagttgtttttacttgcccatttgcttctgattctgataatttataattttaatatttctca |
118 |
Q |
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| T |
56189317 |
atagttaagatacttgtaaaaaatgctaagtaatgagaaagttgtttttatttgcccatttgcttctgattctgataatttataattttaatatttctca |
56189218 |
T |
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| Q |
119 |
aagctattcagagtaactatggtcaaacaatgtcaacttcaaaatgtaggatttgatgttatcaatcttttagttatagctgcaagaattcaattgtctt |
218 |
Q |
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| T |
56189217 |
aagctattcagagtaactatggtcaaacaatgtcaacttcaaaatgtaggatttgatgttatcaatcttttagttatagctgcaagaattcaattgtctt |
56189118 |
T |
|
| Q |
219 |
ttagtttctgctcataagattgtgtttcttttcagcaagtatttgagttcaaatggtttcaattatgtagaataggaaggtaaccacggtttggttgaat |
318 |
Q |
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| T |
56189117 |
ttagtttctgctcataagattgtgtttcttttcagcaagtatttgagttcaaatggtttcaattatgtagaataggaaggtaaccacggtttggttgaat |
56189018 |
T |
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| Q |
319 |
gcttgcaacaaaatactccctctcaacatcaagggttgcaacaccaa |
365 |
Q |
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| T |
56189017 |
gcttgcaacaaaatactccctctcaacatcaagggttgcaacaccaa |
56188971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 2391947 - 2392270
Alignment:
| Q |
19 |
atagttaagatacttgtaaaaaatgctaagtaatgagaaagttgtttttacttgcccatttgcttctgattctgataatttataattttaatatttctca |
118 |
Q |
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|||||||| | ||||||| ||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||||| |||| |||||||| ||| |
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| T |
2391947 |
atagttaacacacttgtacaaaatgccgagtaatgagaaagtt-tttttatttgtccatttgcttctgattctgata------aattgtaatatttttca |
2392039 |
T |
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| Q |
119 |
aagctattcagagtaactatggtcaaacaa-tgtcaacttcaaaatgtaggatttgatgttatcaatcttttagttatagctgcaagaattcaattgtct |
217 |
Q |
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| T |
2392040 |
a--ctattcagagttactatggtcaaacaattattaactt-aaaatgtagaattttatgttatcaat-atttagttataacttcatgagtttaactgtat |
2392135 |
T |
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| Q |
218 |
t-ttagtttctgctcataagattgtgtttcttttc-agcaagtatttgagttcaaatggtttcaattatgtagaataggaaggtaaccacggtttggttg |
315 |
Q |
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| T |
2392136 |
tcttagtttctgaatgcaagattttgtttcttttcaatcaaatagtttagctcaagtgatttctttcataaagaacaggaagatagcgacggtttggttg |
2392235 |
T |
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| Q |
316 |
aatgcttgcaacaaaatact--ccctctcaacatc |
348 |
Q |
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| T |
2392236 |
aatccttgccacaaaatatttgccctctcaacatc |
2392270 |
T |
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