View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_28 (Length: 324)
Name: NF8172_high_28
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 56188996 - 56188667
Alignment:
| Q |
1 |
ctcaacatcaagggttgcaacacaaagtagtcgctttaaagcaattgcaacagtgaatttcattggattttctaatcaagttggtaactgcatttggagc |
100 |
Q |
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| T |
56188996 |
ctcaacatcaagggttgcaacaccaagtagtcgctttaaagcaattgcaacagtgaatttcattggattttctaattaagttggtaactgcatttggagc |
56188897 |
T |
|
| Q |
101 |
agcaattgccaaccccttaataaatggtcttcacacttaatttaattagtgtcccatcgtccccagtcatttcaggcttactagtctcataggcgggtac |
200 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
56188896 |
agcaattgccaaccccttaataaaaggtcttcaaacttaatttaattagtgtcccatcgtccccagtcatttcaggcttactagcctcataggcgggtac |
56188797 |
T |
|
| Q |
201 |
attacaaattccaggccatcagggacttaaaaattaatgatcaagttccatcatcaatttctgatatcaacgactcctag--------aaaagttaaatt |
292 |
Q |
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|||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
56188796 |
attacaaactccaggccatcagaggcttaaaaattaatgatcaagttccatcatcaatttctgatatcaatgactcctagccacttaaaaaagttaaatt |
56188697 |
T |
|
| Q |
293 |
agtggcctattttacagaataatatagcca |
322 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
56188696 |
agtggcctattttacagaataatattgcca |
56188667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 2392285 - 2392392
Alignment:
| Q |
26 |
agtagtcgctttaaagcaattgcaacagtgaatttcattggattttctaatcaagttggtaactgcatttggagcagcaattgccaaccccttaataaat |
125 |
Q |
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|||||||||||| |||||| |||| ||| | ||||||| ||||||| |||| ||||| ||||| || ||||||||||| |||||||||||||| || |
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| T |
2392285 |
agtagtcgctttgtagcaatcgcaagagtagaattcattgcattttctcatcaggttggcaactgtatctggagcagcaagtgccaaccccttaactaaa |
2392384 |
T |
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| Q |
126 |
ggtcttca |
133 |
Q |
| |
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|||||||| |
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| T |
2392385 |
ggtcttca |
2392392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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