View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_34 (Length: 298)
Name: NF8172_high_34
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 55060076 - 55060243
Alignment:
| Q |
19 |
catcaatcctcttcttagatttaagttcagtaggttcaacaggataattcccagtgaaacaagcataacagaaattagaagaatcatcacccaacaactt |
118 |
Q |
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| T |
55060076 |
catcaatcctcttcttagatttaagttcagtaggttcaacaggataattcccagtgaaacaagcataacagaaattagaagaatcatcacccaacaactt |
55060175 |
T |
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| Q |
119 |
cttcaaactatggataggtagaaaagcaagggaatcacaaccaataaattccttcatcccagccacac |
186 |
Q |
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| T |
55060176 |
cttcaaactatccataggtagaaaagcaagggaatcacaacgaataaattccttaatcccagccacac |
55060243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 55060283 - 55060386
Alignment:
| Q |
181 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaattttagatgt |
280 |
Q |
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| T |
55060283 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaacaacctcgcaattttagatga |
55060382 |
T |
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| Q |
281 |
tgtt |
284 |
Q |
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|||| |
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| T |
55060383 |
tgtt |
55060386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 27356468 - 27356558
Alignment:
| Q |
181 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaat |
271 |
Q |
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| T |
27356468 |
ccacaccatagtaacaagaaccaataattggtggacttgcaattctcatgtgaacttcttttgcacctgcttccttaagcaacctcacaat |
27356558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 27356291 - 27356356
Alignment:
| Q |
49 |
taggttcaacaggataattcccagtgaaacaagcataacagaaattagaagaatcatcacccaaca |
114 |
Q |
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| T |
27356291 |
taggctcaacagggtatttcccagagaaacaagcataacaaaaattaggagaatcattacccaaca |
27356356 |
T |
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