View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_37 (Length: 273)
Name: NF8172_high_37
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 36288487 - 36288737
Alignment:
| Q |
1 |
cctaattccatatcttcacctctcaaacaaattagccaaaaagggacacaaatc-tctttcttcatccccaagaaaacacaaaccaagttagaaaaattc |
99 |
Q |
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| T |
36288487 |
cctaattccatatcttcacctctcaaacatattagccaaaaagggagacaaaacctctttcttcatccccaagaaaacacaaaccaagttagaaaaattc |
36288586 |
T |
|
| Q |
100 |
aacctttacccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggcctaccctttggcgctgaaaccacttcagatgtctctttctctt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288587 |
aacctttacccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggcctaccctttggcgctgaaaccacttcagatgtctctttctctt |
36288686 |
T |
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| Q |
200 |
taggtccactcatcatgacagctatggatcaaacacaacctcaaattgaac |
250 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36288687 |
taggtccactcatcatgacagctatggatcaaacaaaacctcaaattgaac |
36288737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 35008941 - 35009197
Alignment:
| Q |
7 |
tccatatcttcacctctcaaacaaattagccaaaaagggacacaaa-tctctttcttcatccccaagaaaacacaaaccaagttagaaaaattcaacctt |
105 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
35008941 |
tccatatcttcatctctcaaacaaattagccaaaaggggacacaaaatctctttcttcattcccaagaaaacacaaaccaaattagaacaattcaacctt |
35009040 |
T |
|
| Q |
106 |
tacccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggcctaccctttggcgctgaaaccacttcagatgtctctttctctttaggtc |
205 |
Q |
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| T |
35009041 |
tatccaaatttaatcactttttaccctctcaatgttcctcatattcatggtcttccatttggtgctgaaaccacttcagatgtctcattctctttaggtc |
35009140 |
T |
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| Q |
206 |
cactcatcatgacagctatggatcaaacacaacctcaaattgaacttcttctcactc |
262 |
Q |
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| T |
35009141 |
cactcatcatgacagctatggatcaaactcaacctcaagttgaacttcttctcactc |
35009197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 35036992 - 35036740
Alignment:
| Q |
7 |
tccatatcttcacctctcaaacaaattagccaaaaagggacacaaa-tctctttcttcatccccaagaaaacacaaaccaagttagaaaaattcaacctt |
105 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||| |||||| ||||||||||| |
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| T |
35036992 |
tccatatcttcatctctcaaacaaattagccaaaaggggacacaaaatctctttcttcattcccacgaaaacacaaaccaaattagaacaattcaacctt |
35036893 |
T |
|
| Q |
106 |
tacccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggcctaccctttggcgctgaaaccacttcagatgtctctttctctttaggtc |
205 |
Q |
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|| ||||| || ||||| ||||||||||||||||||||||||||| | || || || ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
35036892 |
tatccaaatctcatcactttttaccctctcaatgttcctcacattcatggtcttccatttggtgctgaaaccacttcagatgtctcattctctttaggtc |
35036793 |
T |
|
| Q |
206 |
cactcatcatgacagctatggatcaaacacaacctcaaattgaacttcttctc |
258 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
35036792 |
cactcatcatgacagctatggatcaaacacagcctcaagttgaacttcttctc |
35036740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 35026206 - 35026387
Alignment:
| Q |
8 |
ccatatcttcacctctcaaacaaattagccaaaaagggacacaaa-tctctttcttcatccccaagaaaacacaaaccaagttagaaaaattcaaccttt |
106 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| || |||||| | || |||||||||||||| |||||||||||||||||| || | ||||||| |
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| T |
35026206 |
ccatatcttcacctctccaacaaattagcaaaaaaaggtcacaaaatatcattcttcatccccaaaaaaacacaaaccaagttacaacatctcaacctaa |
35026305 |
T |
|
| Q |
107 |
acccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggcctaccctttggcgctgaaaccacttcagatgt |
188 |
Q |
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||||||| || ||||| ||||||||||||||||||||||||||||| || || ||| ||| |||||||| |||||||||| |
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| T |
35026306 |
acccaaatctcatcactttttaccctctcaatgttcctcacattgatggtcttcccgatggtgctgaaacatcttcagatgt |
35026387 |
T |
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