View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_4 (Length: 650)
Name: NF8172_high_4
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 323 - 494
Target Start/End: Original strand, 18030824 - 18030995
Alignment:
| Q |
323 |
atttaagggtaattttgtatttttcgctttccatttgcgaccgtgcccctccgagccgacacagtcatatgtacgggtgttcattggtccgggtgaccca |
422 |
Q |
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| T |
18030824 |
atttaagggcaatttcgtatttttctctttccatttgcgaccgtgcccctccgagccgatacagtcatatgtacgggtgttcattggtccggataaccca |
18030923 |
T |
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| Q |
423 |
ttcaacccgcatttgttcgaacccatttaaggttggttctaatccgaaccaactcattcaaacctttggtag |
494 |
Q |
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| T |
18030924 |
ttcaacccgcatttgttcgaacccatttaagtttggttctaatccgaaccaactcattcaaacctttagtag |
18030995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 18030630 - 18030788
Alignment:
| Q |
142 |
caaagcaacaaactatagctatggaatgataggggatgcgacggcgcttgaagaaaatgcggttgtggacagaacggagcggtggagcacggcctgggtc |
241 |
Q |
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| T |
18030630 |
caaagcaacaaactatagctatggaatgataggggatgcgacggcgcttgaagacaatgcggctgtggacagaacggagcggtggagcacggcctaggtc |
18030729 |
T |
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| Q |
242 |
cagaggttcgtaacgtcaaaaaccgaaacaaataggttttatttggg-aatttagggac |
299 |
Q |
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| T |
18030730 |
cagaggttcgcaacgtcaaaaaccgaaacaaatgggttttatttgggaaatttagggac |
18030788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 513 - 650
Target Start/End: Original strand, 18030983 - 18031120
Alignment:
| Q |
513 |
aaacctttagtagtttggttgaggtaatgagtttatgatttcaaacacttaaaaatgtcattttatgaatctttgtctcaccttttaatttcgtttgata |
612 |
Q |
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| T |
18030983 |
aaacctttagtagtttggttgaagtaatgagtttatgatttcaaacacttaaaaatgtcattttatgaatctttgtctcaccctttaatttcgtttgata |
18031082 |
T |
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| Q |
613 |
ttgtgcatagtgatcgttggacatcagcaactcttggt |
650 |
Q |
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| T |
18031083 |
ttgtgcatagtgatcgttggacatcaacaactcttggt |
18031120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 562 - 647
Target Start/End: Original strand, 55156304 - 55156389
Alignment:
| Q |
562 |
taaaaatgtcattttatgaatctttgtctcaccttttaatttcgtttgatattgtgcatagtgatcgttggacatcagcaactctt |
647 |
Q |
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| T |
55156304 |
taaaaatgtcattttatgaatctttgtctcacactttattaccgtttgatattgtacatagtgatctttggacatcaccaactctt |
55156389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 562 - 643
Target Start/End: Original strand, 29641862 - 29641943
Alignment:
| Q |
562 |
taaaaatgtcattttatgaatctttgtctcaccttttaatttcgtttgatattgtgcatagtgatcgttggacatcagcaac |
643 |
Q |
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| T |
29641862 |
taaaaatgccattttatgaatctttgtctcacactttattaccgtttgatattgtgcatggtaatctttggacttcaccaac |
29641943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 562 - 647
Target Start/End: Complemental strand, 22002686 - 22002601
Alignment:
| Q |
562 |
taaaaatgtcattttatgaatctttgtctcaccttttaatttcgtttgatattgtgcatagtgatcgttggacatcagcaactctt |
647 |
Q |
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| T |
22002686 |
taaaaatttcatttcatgaatatttgtctcacacttcattaccttttgatattgtgcatagtgatctttggacatcactaactctt |
22002601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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