View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_high_48 (Length: 247)

Name: NF8172_high_48
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_high_48
NF8172_high_48
[»] chr4 (4 HSPs)
chr4 (19-246)||(54392927-54393154)
chr4 (184-243)||(4212815-4212874)
chr4 (184-245)||(25885758-25885819)
chr4 (184-236)||(23319731-23319783)
[»] chr1 (2 HSPs)
chr1 (184-245)||(46423153-46423214)
chr1 (184-247)||(1005141-1005205)
[»] chr2 (3 HSPs)
chr2 (184-236)||(43036513-43036565)
chr2 (184-221)||(40835437-40835474)
chr2 (183-227)||(27695741-27695785)
[»] chr5 (2 HSPs)
chr5 (185-246)||(11054085-11054147)
chr5 (207-247)||(14599413-14599453)
[»] chr3 (4 HSPs)
chr3 (184-245)||(42747887-42747948)
chr3 (184-227)||(30365685-30365728)
chr3 (184-224)||(849555-849595)
chr3 (183-227)||(28795986-28796030)
[»] chr7 (1 HSPs)
chr7 (208-247)||(35267308-35267347)
[»] chr6 (1 HSPs)
chr6 (184-218)||(24626168-24626202)
[»] chr8 (2 HSPs)
chr8 (188-245)||(1929954-1930011)
chr8 (183-236)||(11861695-11861748)
[»] scaffold0018 (1 HSPs)
scaffold0018 (184-228)||(157980-158024)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 54393154 - 54392927
Alignment:
Q  19 agttcgaataccgttagacttattgatcagagtcagaatatgattggagtagtatctcttgatcaggcaattcgaacggctgaagatgctgaacttgatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54393154 agttcgaataccgttagacttattgatcagagtcagaatatggttggagtagtatctcttgatcaggcaattcgaatggctgaagatgctgaacttgatt 54393055  T
Q  119 tggtattttcatctttttcttgttatattgtatatttttgactcagttctatcatatagtcatcatttggataaacaacttatttaccgcttatagcaca 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54393054 tggtatgttcatctttttcttgttatattgtatatttttgactcagttctatcatatagtcatcatttggataaacaacttatttaccgcttatagcaca 54392955  T
Q  219 cacacttatgtataagctatttctataa 246  Q
    ||||||||||||||||||||||||||||    
T  54392954 cacacttatgtataagctatttctataa 54392927  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 4212815 - 4212874
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttatgtataagctatttcta 243  Q
    |||||||||||||||||||| | ||||||||||||  |  ||||||||||||||||||||    
T  4212815 tttggataaacaacttattttcagcttatagcacaagcgattatgtataagctatttcta 4212874  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 25885758 - 25885819
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttatgtataagctatttctata 245  Q
    |||||||||||||||||||| | ||||| ||| || |||||||||||| |||| ||||||||    
T  25885758 tttggataaacaacttatttgcagcttacagcgcaaacacttatgtattagctctttctata 25885819  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 23319731 - 23319783
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttatgtataagct 236  Q
    ||||||||| |||||||||| | |||||||| ||||||||||||  |||||||    
T  23319731 tttggataagcaacttatttgcagcttatagtacacacacttattcataagct 23319783  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 46423153 - 46423214
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttatgtataagctatttctata 245  Q
    |||||||||||||||||||| | ||||||| ||||  ||||||||| |||||||||||||||    
T  46423153 tttggataaacaacttatttgcagcttataacacaagcacttatgtctaagctatttctata 46423214  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 1005205 - 1005141
Alignment:
Q  184 tttggataaacaactta-tttaccgcttatagcacacacacttatgtataagctatttctataac 247  Q
    |||||||||||||| || ||| | ||||||| || | |||||||||||||| |||||||||||||    
T  1005205 tttggataaacaacataattttcagcttatatcataaacacttatgtataaactatttctataac 1005141  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 43036513 - 43036565
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttatgtataagct 236  Q
    |||||||||||||||||||| |||||||||||| |  ||||||||||||||||    
T  43036513 tttggataaacaacttatttgccgcttatagcataaccacttatgtataagct 43036565  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 40835437 - 40835474
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacac 221  Q
    |||||||||||||||||||| | |||||||||||||||    
T  40835437 tttggataaacaacttatttgcagcttatagcacacac 40835474  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 27695785 - 27695741
Alignment:
Q  183 atttggataaacaacttatttaccgcttatagcacacacacttat 227  Q
    |||||||||||||||||||||   |||||||||||| ||||||||    
T  27695785 atttggataaacaacttatttgtagcttatagcacaaacacttat 27695741  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 11054085 - 11054147
Alignment:
Q  185 ttggataaacaacttatttaccg-cttatagcacacacacttatgtataagctatttctataa 246  Q
    |||||||||||||||| || ||| ||||||||| | || ||||||||||||||||||||||||    
T  11054085 ttggataaacaacttaatttccggcttatagcataaacgcttatgtataagctatttctataa 11054147  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 14599453 - 14599413
Alignment:
Q  207 gcttatagcacacacacttatgtataagctatttctataac 247  Q
    |||||||||| | |||||||||| |||||||||||||||||    
T  14599453 gcttatagcataaacacttatgtttaagctatttctataac 14599413  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 42747948 - 42747887
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttatgtataagctatttctata 245  Q
    |||||||||||| ||||||| |  ||||||||||| || | |||||||||||||||||||||    
T  42747948 tttggataaacagcttatttgcaacttatagcacaaacgcctatgtataagctatttctata 42747887  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 30365728 - 30365685
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttat 227  Q
    |||||||||||||||||||||  |||||||||||| ||||||||    
T  30365728 tttggataaacaacttatttatagcttatagcacaaacacttat 30365685  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 849555 - 849595
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacact 224  Q
    |||||||||||||||||||| | |||||||||||| |||||    
T  849555 tttggataaacaacttatttgcagcttatagcacaaacact 849595  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 28796030 - 28795986
Alignment:
Q  183 atttggataaacaacttatttaccgcttatagcacacacacttat 227  Q
    |||| |||||||||||||||||| |||||||||||| ||| ||||    
T  28796030 atttagataaacaacttatttacagcttatagcacaaacatttat 28795986  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 35267308 - 35267347
Alignment:
Q  208 cttatagcacacacacttatgtataagctatttctataac 247  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  35267308 cttatagcatacaaacttatgtataagctatttctataac 35267347  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 24626168 - 24626202
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcaca 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  24626168 tttggataaacaacttatttacagcttatagcaca 24626202  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 1929954 - 1930011
Alignment:
Q  188 gataaacaacttatttaccgcttatagcacacacacttatgtataagctatttctata 245  Q
    ||||||||||||| || | ||||||||||||  | |||||||||||| ||||||||||    
T  1929954 gataaacaacttacttgcagcttatagcacaagcgcttatgtataagttatttctata 1930011  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 11861695 - 11861748
Alignment:
Q  183 atttggataaacaacttatttaccgcttatagcacacacacttatgtataagct 236  Q
    ||||||||||||  ||||||| | |||||||| ||| |||||||||||||||||    
T  11861695 atttggataaactgcttatttgcagcttatagaacaaacacttatgtataagct 11861748  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 157980 - 158024
Alignment:
Q  184 tttggataaacaacttatttaccgcttatagcacacacacttatg 228  Q
    |||||||||||| ||||||| | |||||||||||| |||||||||    
T  157980 tttggataaacagcttatttgcagcttatagcacaaacacttatg 158024  T

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