View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_5 (Length: 605)
Name: NF8172_high_5
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 9 - 589
Target Start/End: Original strand, 52577183 - 52577762
Alignment:
| Q |
9 |
gcagaacctgtggcaattaaattaaatgcacaagatgaacttgatacctgctttcccatcagaccattggcagcattctctaaccaactatcagtcacag |
108 |
Q |
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| T |
52577183 |
gcagaacttgtggcaattaaattacatgcacaagatgaacttgatacctgctttcccatcagaccattggcagcattctctaaccaactatccgtcacag |
52577282 |
T |
|
| Q |
109 |
tctgtagagaataagttgtttacatacgaaaaataaaaccttgtaagataattgtttacatttaaatcatcttcaaacagtactccctnnnnnnnttaat |
208 |
Q |
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| T |
52577283 |
tctgtagagaataagttgtttacataccaaaaataaaacctagtaagataattgtttacatttaaatcatcttcaaacagtactccttaaaaaaattaat |
52577382 |
T |
|
| Q |
209 |
ttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgccattcgccctcttctagtt |
308 |
Q |
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| T |
52577383 |
ttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgccattcgccctcttctagtt |
52577482 |
T |
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| Q |
309 |
ctggatcttcttccccagaattcttatttaaggaaatgagtttatctattgcctgttggaattaaggatgtgaaaaatagtgacattggaaatattccag |
408 |
Q |
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| T |
52577483 |
ctggatcttcttccccagaattcttatttaaggaaatgagtttatctattgcctgttggaattaaggatgtgaaaaatagtgacattggaaatattccag |
52577582 |
T |
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| Q |
409 |
ttatgtttatagagnnnnnnngagcacccttacctctccaacacccacccccgatgaaattgctgttaataacttttgtctgggttcagtttgcttctgc |
508 |
Q |
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| T |
52577583 |
ttatgtttattga-aaaaaaagagcacccttacctctcgaacacccacccccgatgaaattgctgttaataacttttgtctgggttcagtttgcttctgc |
52577681 |
T |
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| Q |
509 |
agcacaaatgtggttccctgcactatatatatgttgctgttaagtcttggaaacattgtttttataaaaatgctttgattt |
589 |
Q |
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| T |
52577682 |
agcacaaatgtggttccctgcactatatatatgttgctgttaagtcttggaaacattgtttttataaaaatgctttgattt |
52577762 |
T |
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