View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_53 (Length: 224)
Name: NF8172_high_53
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 23956025 - 23955829
Alignment:
| Q |
21 |
acagtatattcctattttggatcattacagcaatggtttaccacttgtttgcactatgtatgcttctagtgaatgttactttggtgttaacctgaaccct |
120 |
Q |
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| T |
23956025 |
acagtatattcctattttggatcattatagcaatggtttaccacttgtttgcactatgtatgcttctagtgaatgttactttggtgttaacttgaaccct |
23955926 |
T |
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| Q |
121 |
ctttgtcaacctagtgaagtgtcttacactcttattcctaccatgtgctactttgaatttttgcctgtgaatagaagtaatggtgtctctgcttctc |
217 |
Q |
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| T |
23955925 |
ctttgtcaacctagtgaagtgtcttacactcttattcctaccatgtgctactttgaatttttgcctgtgaatagaagtaatggtgtcactgattctc |
23955829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 34380606 - 34380785
Alignment:
| Q |
21 |
acagtatattcctattttggatcattacagcaatggtttaccacttgtttgcactatgtatgcttctagtgaatgttactttggtgttaacctgaaccct |
120 |
Q |
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|||||| ||||||| ||||||| | || || ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
34380606 |
acagtacattcctactttggattactatagtaatgggttaccactagtttgtactatgtatgcatctagtgaatgttactttggtgttaaccttaatcct |
34380705 |
T |
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| Q |
121 |
ctttgtcaacctagtgaagtgtcttacactcttattcctaccatgtgctactttgaatttttgcctgtgaatagaagtaa |
200 |
Q |
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| T |
34380706 |
ctttctaagccttgtcatgtgtcttatactcttatccccaccatgtgctactatgaatttttacctgttaatagaagtaa |
34380785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 15837024 - 15836861
Alignment:
| Q |
22 |
cagtatattcctattttggatcattacagcaatggtttaccacttgtttgcactatgtatgcttctagtgaatgttactttggtgttaacctgaaccctc |
121 |
Q |
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||||||||||| ||||||||| |||| ||||||||| | || ||||| || ||||||||||||||| ||| ||||| ||||| |||| | |||||| |
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| T |
15837024 |
cagtatattccgattttggattattatagcaatggtcttcctcttgtgtgtactatgtatgcttcttctgagtgttattttggacttaatttaaaccctt |
15836925 |
T |
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| Q |
122 |
tttgtcaacctagtgaagtgtcttacactcttattcctaccatgtgctactttgaatttttgcc |
185 |
Q |
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| T |
15836924 |
tatgtgaaccaagtgaggtatcttatacacttgttcctactatggcctactttgagttcttgcc |
15836861 |
T |
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